Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20109

Experiment: Paraquat dichloride 0.2 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20108 and SM_b20109 are separated by 72 nucleotidesSM_b20109 and SM_b20110 overlap by 4 nucleotidesSM_b20110 and SM_b20111 overlap by 4 nucleotides SM_b20108: SM_b20108 - peptide ABC transporter substrate-binding protein, at 118,703 to 120,211 _b20108 SM_b20109: SM_b20109 - peptide ABC transporter permease, at 120,284 to 121,207 _b20109 SM_b20110: SM_b20110 - oligopeptide ABC transporter permease, at 121,204 to 122,151 _b20110 SM_b20111: SM_b20111 - oligopeptide ABC transporter ATP-binding protein, at 122,148 to 123,788 _b20111 Position (kb) 120 121 122Strain fitness (log2 ratio) -2 -1 0 1 2at 119.306 kb on + strand, within SM_b20108at 119.306 kb on + strand, within SM_b20108at 119.307 kb on - strand, within SM_b20108at 119.342 kb on + strand, within SM_b20108at 119.342 kb on + strand, within SM_b20108at 119.343 kb on - strand, within SM_b20108at 119.343 kb on - strand, within SM_b20108at 119.456 kb on + strand, within SM_b20108at 119.657 kb on + strand, within SM_b20108at 119.657 kb on + strand, within SM_b20108at 119.657 kb on + strand, within SM_b20108at 119.657 kb on + strand, within SM_b20108at 119.657 kb on + strand, within SM_b20108at 119.657 kb on + strand, within SM_b20108at 119.657 kb on + strand, within SM_b20108at 119.657 kb on + strand, within SM_b20108at 119.658 kb on - strand, within SM_b20108at 119.658 kb on - strand, within SM_b20108at 119.658 kb on - strand, within SM_b20108at 119.824 kb on - strand, within SM_b20108at 119.855 kb on + strand, within SM_b20108at 119.856 kb on - strand, within SM_b20108at 119.920 kb on + strand, within SM_b20108at 119.921 kb on - strand, within SM_b20108at 119.954 kb on + strand, within SM_b20108at 119.954 kb on + strand, within SM_b20108at 119.972 kb on + strand, within SM_b20108at 119.973 kb on - strand, within SM_b20108at 120.265 kb on - strandat 120.370 kb on + strandat 120.386 kb on + strand, within SM_b20109at 120.393 kb on - strand, within SM_b20109at 120.482 kb on + strand, within SM_b20109at 120.483 kb on - strand, within SM_b20109at 120.891 kb on - strand, within SM_b20109at 120.891 kb on - strand, within SM_b20109at 121.156 kb on - strandat 121.166 kb on + strandat 121.188 kb on + strandat 121.188 kb on + strandat 121.189 kb on - strandat 121.189 kb on - strandat 121.189 kb on - strandat 121.189 kb on - strandat 121.435 kb on + strand, within SM_b20110at 121.435 kb on + strand, within SM_b20110at 121.436 kb on - strand, within SM_b20110at 121.573 kb on + strand, within SM_b20110at 121.726 kb on + strand, within SM_b20110at 121.726 kb on + strand, within SM_b20110at 121.726 kb on + strand, within SM_b20110at 121.931 kb on + strand, within SM_b20110at 121.932 kb on - strand, within SM_b20110at 121.932 kb on - strand, within SM_b20110at 122.053 kb on - strand, within SM_b20110at 122.077 kb on + strandat 122.077 kb on + strandat 122.078 kb on - strandat 122.078 kb on - strandat 122.078 kb on - strandat 122.078 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
remove
119,306 + SM_b20108 0.40 -0.2
119,306 + SM_b20108 0.40 -0.1
119,307 - SM_b20108 0.40 +1.5
119,342 + SM_b20108 0.42 -0.1
119,342 + SM_b20108 0.42 -1.6
119,343 - SM_b20108 0.42 -0.0
119,343 - SM_b20108 0.42 -0.3
119,456 + SM_b20108 0.50 -2.7
119,657 + SM_b20108 0.63 -2.0
119,657 + SM_b20108 0.63 -1.8
119,657 + SM_b20108 0.63 +0.3
119,657 + SM_b20108 0.63 +1.4
119,657 + SM_b20108 0.63 -1.6
119,657 + SM_b20108 0.63 +0.8
119,657 + SM_b20108 0.63 +0.9
119,657 + SM_b20108 0.63 +0.4
119,658 - SM_b20108 0.63 +0.9
119,658 - SM_b20108 0.63 +0.1
119,658 - SM_b20108 0.63 +1.4
119,824 - SM_b20108 0.74 +0.2
119,855 + SM_b20108 0.76 -2.5
119,856 - SM_b20108 0.76 +0.1
119,920 + SM_b20108 0.81 -0.4
119,921 - SM_b20108 0.81 +1.3
119,954 + SM_b20108 0.83 +0.4
119,954 + SM_b20108 0.83 +0.4
119,972 + SM_b20108 0.84 -0.5
119,973 - SM_b20108 0.84 +2.0
120,265 - -0.5
120,370 + +0.3
120,386 + SM_b20109 0.11 -0.2
120,393 - SM_b20109 0.12 +0.4
120,482 + SM_b20109 0.21 +1.3
120,483 - SM_b20109 0.22 +0.1
120,891 - SM_b20109 0.66 -0.2
120,891 - SM_b20109 0.66 -0.4
121,156 - -0.3
121,166 + +0.0
121,188 + +0.1
121,188 + -0.4
121,189 - +0.0
121,189 - +0.6
121,189 - +1.2
121,189 - -0.2
121,435 + SM_b20110 0.24 +0.5
121,435 + SM_b20110 0.24 +0.5
121,436 - SM_b20110 0.24 -0.3
121,573 + SM_b20110 0.39 -0.6
121,726 + SM_b20110 0.55 -1.1
121,726 + SM_b20110 0.55 +1.2
121,726 + SM_b20110 0.55 -0.0
121,931 + SM_b20110 0.77 +1.2
121,932 - SM_b20110 0.77 -1.0
121,932 - SM_b20110 0.77 -0.6
122,053 - SM_b20110 0.90 +0.6
122,077 + -0.6
122,077 + -1.8
122,078 - +1.7
122,078 - -0.1
122,078 - +0.0
122,078 - -0.4

Or see this region's nucleotide sequence