Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20024 and SM_b20025 are separated by 249 nucleotides SM_b20025 and SM_b20026 are separated by 206 nucleotides SM_b20026 and SM_b20027 are separated by 12 nucleotides
SM_b20024: SM_b20024 - ribosomal large subunit pseudouridine synthase B, at 34,935 to 35,897
_b20024
SM_b20025: SM_b20025 - hypothetical protein, at 36,147 to 37,124
_b20025
SM_b20026: SM_b20026 - hypothetical protein, at 37,331 to 37,792
_b20026
SM_b20027: SM_b20027 - hypothetical protein, at 37,805 to 39,310
_b20027
Position (kb) 36
37
38 Strain fitness (log2 ratio) -2
-1
0
1
2 at 35.365 kb on - strand, within SM_b20024 at 35.576 kb on - strand, within SM_b20024 at 35.576 kb on - strand, within SM_b20024 at 35.578 kb on - strand, within SM_b20024 at 35.578 kb on - strand, within SM_b20024 at 35.578 kb on - strand, within SM_b20024 at 35.578 kb on - strand, within SM_b20024 at 35.578 kb on - strand, within SM_b20024 at 35.872 kb on - strand at 36.023 kb on + strand at 36.063 kb on - strand at 36.405 kb on + strand, within SM_b20025 at 36.406 kb on - strand, within SM_b20025 at 36.492 kb on + strand, within SM_b20025 at 36.493 kb on - strand, within SM_b20025 at 36.693 kb on + strand, within SM_b20025 at 36.694 kb on - strand, within SM_b20025 at 36.694 kb on - strand, within SM_b20025 at 36.804 kb on + strand, within SM_b20025 at 36.906 kb on + strand, within SM_b20025 at 36.907 kb on - strand, within SM_b20025 at 36.907 kb on - strand, within SM_b20025 at 37.113 kb on + strand at 37.742 kb on + strand, within SM_b20026 at 37.742 kb on + strand, within SM_b20026 at 37.791 kb on - strand at 37.791 kb on - strand at 37.791 kb on - strand at 37.884 kb on + strand at 37.885 kb on - strand at 38.006 kb on + strand, within SM_b20027 at 38.006 kb on + strand, within SM_b20027 at 38.006 kb on + strand, within SM_b20027 at 38.006 kb on + strand, within SM_b20027 at 38.007 kb on - strand, within SM_b20027 at 38.007 kb on - strand, within SM_b20027 at 38.010 kb on - strand, within SM_b20027 at 38.010 kb on - strand, within SM_b20027 at 38.053 kb on + strand, within SM_b20027 at 38.053 kb on + strand, within SM_b20027 at 38.053 kb on + strand, within SM_b20027 at 38.054 kb on - strand, within SM_b20027
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 35,365 - SM_b20024 0.45 +0.2 35,576 - SM_b20024 0.67 -0.6 35,576 - SM_b20024 0.67 -1.8 35,578 - SM_b20024 0.67 +0.6 35,578 - SM_b20024 0.67 -0.4 35,578 - SM_b20024 0.67 +0.3 35,578 - SM_b20024 0.67 -1.2 35,578 - SM_b20024 0.67 +0.9 35,872 - +0.7 36,023 + +0.2 36,063 - -1.5 36,405 + SM_b20025 0.26 -1.9 36,406 - SM_b20025 0.26 +2.1 36,492 + SM_b20025 0.35 +0.2 36,493 - SM_b20025 0.35 -0.5 36,693 + SM_b20025 0.56 +0.3 36,694 - SM_b20025 0.56 -0.4 36,694 - SM_b20025 0.56 +0.4 36,804 + SM_b20025 0.67 -0.6 36,906 + SM_b20025 0.78 +1.2 36,907 - SM_b20025 0.78 +1.0 36,907 - SM_b20025 0.78 +0.3 37,113 + -0.3 37,742 + SM_b20026 0.89 -0.5 37,742 + SM_b20026 0.89 +1.0 37,791 - -0.0 37,791 - -0.3 37,791 - +1.8 37,884 + -2.1 37,885 - -0.2 38,006 + SM_b20027 0.13 +1.2 38,006 + SM_b20027 0.13 +0.5 38,006 + SM_b20027 0.13 +2.0 38,006 + SM_b20027 0.13 +2.7 38,007 - SM_b20027 0.13 +0.2 38,007 - SM_b20027 0.13 +0.4 38,010 - SM_b20027 0.14 +0.4 38,010 - SM_b20027 0.14 +1.2 38,053 + SM_b20027 0.16 -0.9 38,053 + SM_b20027 0.16 +0.1 38,053 + SM_b20027 0.16 +0.4 38,054 - SM_b20027 0.17 -0.3
Or see this region's nucleotide sequence