Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20021 and SM_b20022 are separated by 647 nucleotides SM_b20022 and SM_b20023 are separated by 76 nucleotides
SM_b20021: SM_b20021 - transcriptional regulator, at 29,540 to 30,010
_b20021
SM_b20022: SM_b20022 - hypothetical protein, at 30,658 to 31,224
_b20022
SM_b20023: SM_b20023 - hypothetical protein, at 31,301 to 34,918
_b20023
Position (kb) 30
31
32 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 29.843 kb on + strand, within SM_b20021 at 29.987 kb on + strand at 29.987 kb on + strand at 29.988 kb on - strand at 30.008 kb on + strand at 30.170 kb on - strand at 30.170 kb on - strand at 30.189 kb on + strand at 30.189 kb on + strand at 30.189 kb on + strand at 30.190 kb on - strand at 30.196 kb on + strand at 30.196 kb on + strand at 30.197 kb on - strand at 30.370 kb on + strand at 30.371 kb on - strand at 30.371 kb on - strand at 30.471 kb on + strand at 30.471 kb on + strand at 30.471 kb on + strand at 30.471 kb on + strand at 30.471 kb on + strand at 30.472 kb on - strand at 31.134 kb on + strand, within SM_b20022 at 31.135 kb on - strand, within SM_b20022 at 31.135 kb on - strand, within SM_b20022 at 31.138 kb on + strand, within SM_b20022 at 31.139 kb on - strand, within SM_b20022 at 31.139 kb on - strand, within SM_b20022 at 31.247 kb on + strand at 31.248 kb on - strand at 31.248 kb on - strand at 31.302 kb on + strand at 31.318 kb on - strand at 31.372 kb on + strand at 31.537 kb on + strand at 31.725 kb on + strand, within SM_b20023 at 31.725 kb on + strand, within SM_b20023 at 31.725 kb on + strand, within SM_b20023 at 31.726 kb on - strand, within SM_b20023 at 31.835 kb on + strand, within SM_b20023 at 31.835 kb on + strand, within SM_b20023 at 31.836 kb on - strand, within SM_b20023 at 31.836 kb on - strand, within SM_b20023 at 31.836 kb on - strand, within SM_b20023 at 31.836 kb on - strand, within SM_b20023 at 31.965 kb on + strand, within SM_b20023 at 31.965 kb on + strand, within SM_b20023 at 31.966 kb on - strand, within SM_b20023 at 31.966 kb on - strand, within SM_b20023 at 31.966 kb on - strand, within SM_b20023 at 31.966 kb on - strand, within SM_b20023 at 31.966 kb on - strand, within SM_b20023 at 31.966 kb on - strand, within SM_b20023 at 31.966 kb on - strand, within SM_b20023 at 32.188 kb on + strand, within SM_b20023 at 32.188 kb on + strand, within SM_b20023 at 32.190 kb on + strand, within SM_b20023 at 32.190 kb on + strand, within SM_b20023 at 32.190 kb on + strand, within SM_b20023 at 32.191 kb on - strand, within SM_b20023 at 32.191 kb on - strand, within SM_b20023 at 32.191 kb on - strand, within SM_b20023 at 32.191 kb on - strand, within SM_b20023
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 29,843 + SM_b20021 0.64 -2.4 29,987 + -0.4 29,987 + -1.8 29,988 - -2.1 30,008 + +0.4 30,170 - +0.5 30,170 - -1.6 30,189 + -0.5 30,189 + -0.3 30,189 + -0.6 30,190 - -0.8 30,196 + +0.3 30,196 + +1.2 30,197 - +0.2 30,370 + +1.2 30,371 - -0.3 30,371 - +1.6 30,471 + -0.1 30,471 + -2.0 30,471 + -1.0 30,471 + +1.1 30,471 + +0.4 30,472 - +1.1 31,134 + SM_b20022 0.84 -1.6 31,135 - SM_b20022 0.84 +0.2 31,135 - SM_b20022 0.84 -0.3 31,138 + SM_b20022 0.85 -1.1 31,139 - SM_b20022 0.85 -2.7 31,139 - SM_b20022 0.85 +1.2 31,247 + +1.1 31,248 - -3.4 31,248 - -1.2 31,302 + +0.1 31,318 - -0.8 31,372 + +1.0 31,537 + -0.4 31,725 + SM_b20023 0.12 +0.1 31,725 + SM_b20023 0.12 -2.6 31,725 + SM_b20023 0.12 +1.2 31,726 - SM_b20023 0.12 -0.2 31,835 + SM_b20023 0.15 -0.2 31,835 + SM_b20023 0.15 -0.5 31,836 - SM_b20023 0.15 +0.6 31,836 - SM_b20023 0.15 +0.6 31,836 - SM_b20023 0.15 -0.7 31,836 - SM_b20023 0.15 -1.1 31,965 + SM_b20023 0.18 +0.2 31,965 + SM_b20023 0.18 -1.7 31,966 - SM_b20023 0.18 -0.1 31,966 - SM_b20023 0.18 -0.1 31,966 - SM_b20023 0.18 +0.8 31,966 - SM_b20023 0.18 +0.3 31,966 - SM_b20023 0.18 -0.0 31,966 - SM_b20023 0.18 -0.6 31,966 - SM_b20023 0.18 -2.8 32,188 + SM_b20023 0.25 -0.2 32,188 + SM_b20023 0.25 -0.4 32,190 + SM_b20023 0.25 +0.8 32,190 + SM_b20023 0.25 +0.7 32,190 + SM_b20023 0.25 +0.7 32,191 - SM_b20023 0.25 -0.2 32,191 - SM_b20023 0.25 +0.7 32,191 - SM_b20023 0.25 +0.1 32,191 - SM_b20023 0.25 -0.7
Or see this region's nucleotide sequence