Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20018 and SM_b20019 are separated by 91 nucleotides SM_b20019 and SM_b20020 are separated by 2 nucleotides
SM_b20018: SM_b20018 - sugar ABC transporter substrate-binding protein, at 25,092 to 26,114
_b20018
SM_b20019: SM_b20019 - dihydrolipoamide succinyltransferase, at 26,206 to 27,342
_b20019
SM_b20020: SM_b20020 - pyruvate dehydrogenase E1 component, subunits alpha and beta, at 27,345 to 29,423
_b20020
Position (kb) 26
27
28 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 25.220 kb on - strand, within SM_b20018 at 25.489 kb on + strand, within SM_b20018 at 25.653 kb on + strand, within SM_b20018 at 25.654 kb on - strand, within SM_b20018 at 25.654 kb on - strand, within SM_b20018 at 25.654 kb on - strand, within SM_b20018 at 25.654 kb on - strand, within SM_b20018 at 25.732 kb on + strand, within SM_b20018 at 25.732 kb on + strand, within SM_b20018 at 25.732 kb on + strand, within SM_b20018 at 25.732 kb on + strand, within SM_b20018 at 25.733 kb on - strand, within SM_b20018 at 25.880 kb on + strand, within SM_b20018 at 26.036 kb on + strand at 26.114 kb on + strand at 26.208 kb on - strand at 26.208 kb on - strand at 26.303 kb on + strand at 26.304 kb on - strand at 26.304 kb on - strand at 26.304 kb on - strand at 26.615 kb on - strand, within SM_b20019 at 26.615 kb on - strand, within SM_b20019 at 26.615 kb on - strand, within SM_b20019 at 26.622 kb on + strand, within SM_b20019 at 26.623 kb on - strand, within SM_b20019 at 26.718 kb on - strand, within SM_b20019 at 26.726 kb on + strand, within SM_b20019 at 26.850 kb on + strand, within SM_b20019 at 26.850 kb on + strand, within SM_b20019 at 26.851 kb on - strand, within SM_b20019 at 26.851 kb on - strand, within SM_b20019 at 26.851 kb on - strand, within SM_b20019 at 26.888 kb on - strand, within SM_b20019 at 26.888 kb on - strand, within SM_b20019 at 27.041 kb on + strand, within SM_b20019 at 27.042 kb on - strand, within SM_b20019 at 27.042 kb on - strand, within SM_b20019 at 27.378 kb on + strand at 28.057 kb on + strand, within SM_b20020 at 28.058 kb on - strand, within SM_b20020 at 28.058 kb on - strand, within SM_b20020
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 25,220 - SM_b20018 0.13 +0.7 25,489 + SM_b20018 0.39 +0.7 25,653 + SM_b20018 0.55 -2.9 25,654 - SM_b20018 0.55 +0.5 25,654 - SM_b20018 0.55 +2.0 25,654 - SM_b20018 0.55 +0.3 25,654 - SM_b20018 0.55 +0.8 25,732 + SM_b20018 0.63 -1.1 25,732 + SM_b20018 0.63 -1.0 25,732 + SM_b20018 0.63 +1.1 25,732 + SM_b20018 0.63 -3.7 25,733 - SM_b20018 0.63 -2.4 25,880 + SM_b20018 0.77 +0.3 26,036 + -0.1 26,114 + +1.0 26,208 - +0.8 26,208 - +1.1 26,303 + +2.2 26,304 - +0.1 26,304 - +1.2 26,304 - -4.4 26,615 - SM_b20019 0.36 +0.1 26,615 - SM_b20019 0.36 -1.4 26,615 - SM_b20019 0.36 +0.2 26,622 + SM_b20019 0.37 -3.1 26,623 - SM_b20019 0.37 -0.5 26,718 - SM_b20019 0.45 -1.4 26,726 + SM_b20019 0.46 +0.9 26,850 + SM_b20019 0.57 -0.4 26,850 + SM_b20019 0.57 +1.0 26,851 - SM_b20019 0.57 -1.4 26,851 - SM_b20019 0.57 +0.8 26,851 - SM_b20019 0.57 +0.3 26,888 - SM_b20019 0.60 -0.9 26,888 - SM_b20019 0.60 +0.2 27,041 + SM_b20019 0.73 -0.5 27,042 - SM_b20019 0.74 -0.3 27,042 - SM_b20019 0.74 -0.6 27,378 + -0.3 28,057 + SM_b20020 0.34 +1.2 28,058 - SM_b20020 0.34 +0.1 28,058 - SM_b20020 0.34 -0.7
Or see this region's nucleotide sequence