Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20017 and SM_b20018 are separated by 249 nucleotides SM_b20018 and SM_b20019 are separated by 91 nucleotides
SM_b20017: SM_b20017 - sugar ABC transporter ATP-binding protein, at 23,337 to 24,842
_b20017
SM_b20018: SM_b20018 - sugar ABC transporter substrate-binding protein, at 25,092 to 26,114
_b20018
SM_b20019: SM_b20019 - dihydrolipoamide succinyltransferase, at 26,206 to 27,342
_b20019
Position (kb) 25
26
27 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 24.473 kb on - strand, within SM_b20017 at 24.473 kb on - strand, within SM_b20017 at 24.592 kb on + strand, within SM_b20017 at 24.592 kb on + strand, within SM_b20017 at 24.592 kb on + strand, within SM_b20017 at 24.806 kb on - strand at 24.806 kb on - strand at 25.139 kb on - strand at 25.144 kb on + strand at 25.144 kb on + strand at 25.144 kb on + strand at 25.145 kb on - strand at 25.145 kb on - strand at 25.220 kb on - strand, within SM_b20018 at 25.489 kb on + strand, within SM_b20018 at 25.653 kb on + strand, within SM_b20018 at 25.654 kb on - strand, within SM_b20018 at 25.654 kb on - strand, within SM_b20018 at 25.654 kb on - strand, within SM_b20018 at 25.654 kb on - strand, within SM_b20018 at 25.732 kb on + strand, within SM_b20018 at 25.732 kb on + strand, within SM_b20018 at 25.732 kb on + strand, within SM_b20018 at 25.732 kb on + strand, within SM_b20018 at 25.733 kb on - strand, within SM_b20018 at 25.880 kb on + strand, within SM_b20018 at 26.036 kb on + strand at 26.114 kb on + strand at 26.208 kb on - strand at 26.208 kb on - strand at 26.303 kb on + strand at 26.304 kb on - strand at 26.304 kb on - strand at 26.304 kb on - strand at 26.615 kb on - strand, within SM_b20019 at 26.615 kb on - strand, within SM_b20019 at 26.615 kb on - strand, within SM_b20019 at 26.622 kb on + strand, within SM_b20019 at 26.623 kb on - strand, within SM_b20019 at 26.718 kb on - strand, within SM_b20019 at 26.726 kb on + strand, within SM_b20019 at 26.850 kb on + strand, within SM_b20019 at 26.850 kb on + strand, within SM_b20019 at 26.851 kb on - strand, within SM_b20019 at 26.851 kb on - strand, within SM_b20019 at 26.851 kb on - strand, within SM_b20019 at 26.888 kb on - strand, within SM_b20019 at 26.888 kb on - strand, within SM_b20019 at 27.041 kb on + strand, within SM_b20019 at 27.042 kb on - strand, within SM_b20019 at 27.042 kb on - strand, within SM_b20019
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 24,473 - SM_b20017 0.75 -0.2 24,473 - SM_b20017 0.75 -0.4 24,592 + SM_b20017 0.83 -2.5 24,592 + SM_b20017 0.83 +0.2 24,592 + SM_b20017 0.83 -0.5 24,806 - -0.5 24,806 - -0.4 25,139 - +0.3 25,144 + -0.6 25,144 + -0.2 25,144 + +0.3 25,145 - +0.2 25,145 - -0.8 25,220 - SM_b20018 0.13 +0.7 25,489 + SM_b20018 0.39 +0.7 25,653 + SM_b20018 0.55 -2.9 25,654 - SM_b20018 0.55 +0.5 25,654 - SM_b20018 0.55 +2.0 25,654 - SM_b20018 0.55 +0.3 25,654 - SM_b20018 0.55 +0.8 25,732 + SM_b20018 0.63 -1.1 25,732 + SM_b20018 0.63 -1.0 25,732 + SM_b20018 0.63 +1.1 25,732 + SM_b20018 0.63 -3.7 25,733 - SM_b20018 0.63 -2.4 25,880 + SM_b20018 0.77 +0.3 26,036 + -0.1 26,114 + +1.0 26,208 - +0.8 26,208 - +1.1 26,303 + +2.2 26,304 - +0.1 26,304 - +1.2 26,304 - -4.4 26,615 - SM_b20019 0.36 +0.1 26,615 - SM_b20019 0.36 -1.4 26,615 - SM_b20019 0.36 +0.2 26,622 + SM_b20019 0.37 -3.1 26,623 - SM_b20019 0.37 -0.5 26,718 - SM_b20019 0.45 -1.4 26,726 + SM_b20019 0.46 +0.9 26,850 + SM_b20019 0.57 -0.4 26,850 + SM_b20019 0.57 +1.0 26,851 - SM_b20019 0.57 -1.4 26,851 - SM_b20019 0.57 +0.8 26,851 - SM_b20019 0.57 +0.3 26,888 - SM_b20019 0.60 -0.9 26,888 - SM_b20019 0.60 +0.2 27,041 + SM_b20019 0.73 -0.5 27,042 - SM_b20019 0.74 -0.3 27,042 - SM_b20019 0.74 -0.6
Or see this region's nucleotide sequence