Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_591

Experiment: Gentamicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_590 and Pf1N1B4_591 are separated by 108 nucleotidesPf1N1B4_591 and Pf1N1B4_592 are separated by 231 nucleotides Pf1N1B4_590 - Phosphogluconate repressor HexR, RpiR family, at 680,911 to 681,780 _590 Pf1N1B4_591 - Aldose 1-epimerase, at 681,889 to 682,758 _591 Pf1N1B4_592 - Glucose-selective porin OprB, at 682,990 to 684,336 _592 Position (kb) 681 682 683Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 680.898 kb on + strandat 680.899 kb on - strandat 681.160 kb on + strand, within Pf1N1B4_590at 681.160 kb on + strand, within Pf1N1B4_590at 681.160 kb on + strandat 681.161 kb on - strand, within Pf1N1B4_590at 681.161 kb on - strand, within Pf1N1B4_590at 681.161 kb on - strand, within Pf1N1B4_590at 681.202 kb on + strand, within Pf1N1B4_590at 681.203 kb on - strand, within Pf1N1B4_590at 681.203 kb on - strand, within Pf1N1B4_590at 681.204 kb on + strand, within Pf1N1B4_590at 681.618 kb on + strand, within Pf1N1B4_590at 681.618 kb on + strand, within Pf1N1B4_590at 681.619 kb on - strand, within Pf1N1B4_590at 681.619 kb on - strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strandat 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strandat 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strandat 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.624 kb on + strand, within Pf1N1B4_590at 681.624 kb on + strand, within Pf1N1B4_590at 681.624 kb on + strand, within Pf1N1B4_590at 681.625 kb on - strand, within Pf1N1B4_590at 681.774 kb on + strandat 681.774 kb on + strandat 681.774 kb on + strandat 681.774 kb on + strandat 681.775 kb on - strandat 681.778 kb on + strandat 681.779 kb on - strandat 682.007 kb on - strand, within Pf1N1B4_591at 682.007 kb on - strandat 682.269 kb on + strand, within Pf1N1B4_591at 682.269 kb on + strand, within Pf1N1B4_591at 682.396 kb on + strand, within Pf1N1B4_591at 682.397 kb on - strand, within Pf1N1B4_591at 682.397 kb on - strand, within Pf1N1B4_591at 682.397 kb on - strand, within Pf1N1B4_591at 682.397 kb on - strand, within Pf1N1B4_591at 682.397 kb on - strand, within Pf1N1B4_591at 682.742 kb on - strandat 682.843 kb on + strandat 682.843 kb on + strandat 682.843 kb on + strandat 682.843 kb on + strandat 682.843 kb on + strandat 682.965 kb on + strandat 682.965 kb on + strandat 682.965 kb on + strandat 682.965 kb on + strandat 682.966 kb on - strandat 682.966 kb on - strandat 682.966 kb on - strandat 682.966 kb on - strandat 682.966 kb on - strandat 683.066 kb on + strandat 683.066 kb on + strandat 683.066 kb on + strandat 683.066 kb on + strandat 683.066 kb on + strandat 683.067 kb on - strandat 683.067 kb on - strandat 683.067 kb on - strandat 683.067 kb on - strandat 683.067 kb on - strandat 683.067 kb on - strandat 683.067 kb on - strandat 683.067 kb on - strandat 683.067 kb on - strandat 683.067 kb on - strandat 683.067 kb on - strandat 683.067 kb on - strandat 683.067 kb on - strandat 683.067 kb on - strandat 683.067 kb on - strandat 683.067 kb on - strandat 683.067 kb on - strandat 683.067 kb on - strandat 683.076 kb on + strandat 683.115 kb on - strandat 683.115 kb on - strandat 683.115 kb on - strandat 683.115 kb on - strandat 683.127 kb on - strand, within Pf1N1B4_592at 683.127 kb on - strand, within Pf1N1B4_592at 683.133 kb on - strand, within Pf1N1B4_592at 683.133 kb on - strand, within Pf1N1B4_592at 683.133 kb on - strand, within Pf1N1B4_592at 683.171 kb on + strand, within Pf1N1B4_592at 683.171 kb on + strand, within Pf1N1B4_592at 683.172 kb on - strand, within Pf1N1B4_592at 683.172 kb on - strand, within Pf1N1B4_592at 683.269 kb on - strand, within Pf1N1B4_592at 683.294 kb on + strand, within Pf1N1B4_592at 683.294 kb on + strand, within Pf1N1B4_592at 683.295 kb on - strandat 683.295 kb on - strand, within Pf1N1B4_592at 683.295 kb on - strand, within Pf1N1B4_592at 683.295 kb on - strand, within Pf1N1B4_592at 683.315 kb on + strand, within Pf1N1B4_592at 683.315 kb on + strand, within Pf1N1B4_592at 683.315 kb on + strand, within Pf1N1B4_592at 683.316 kb on - strand, within Pf1N1B4_592at 683.316 kb on - strand, within Pf1N1B4_592at 683.316 kb on - strand, within Pf1N1B4_592at 683.429 kb on + strand, within Pf1N1B4_592at 683.457 kb on - strand, within Pf1N1B4_592at 683.531 kb on + strand, within Pf1N1B4_592at 683.531 kb on + strand, within Pf1N1B4_592at 683.531 kb on + strand, within Pf1N1B4_592at 683.531 kb on + strandat 683.531 kb on + strand, within Pf1N1B4_592at 683.532 kb on - strand, within Pf1N1B4_592at 683.532 kb on - strand, within Pf1N1B4_592at 683.532 kb on - strand, within Pf1N1B4_592at 683.547 kb on - strand, within Pf1N1B4_592at 683.614 kb on - strand, within Pf1N1B4_592at 683.672 kb on + strand, within Pf1N1B4_592at 683.672 kb on + strand, within Pf1N1B4_592at 683.690 kb on + strand, within Pf1N1B4_592at 683.691 kb on - strand, within Pf1N1B4_592at 683.691 kb on - strand, within Pf1N1B4_592at 683.711 kb on + strand, within Pf1N1B4_592at 683.711 kb on + strand, within Pf1N1B4_592at 683.712 kb on - strand, within Pf1N1B4_592at 683.712 kb on - strand, within Pf1N1B4_592at 683.712 kb on - strand, within Pf1N1B4_592at 683.712 kb on - strand, within Pf1N1B4_592at 683.712 kb on - strand, within Pf1N1B4_592

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.001 mg/ml
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680,898 + +0.1
680,899 - +1.0
681,160 + Pf1N1B4_590 0.29 +0.5
681,160 + Pf1N1B4_590 0.29 +0.5
681,160 + +0.6
681,161 - Pf1N1B4_590 0.29 +0.8
681,161 - Pf1N1B4_590 0.29 +1.3
681,161 - Pf1N1B4_590 0.29 +1.4
681,202 + Pf1N1B4_590 0.33 +0.2
681,203 - Pf1N1B4_590 0.34 +1.3
681,203 - Pf1N1B4_590 0.34 +0.6
681,204 + Pf1N1B4_590 0.34 +1.6
681,618 + Pf1N1B4_590 0.81 -0.2
681,618 + Pf1N1B4_590 0.81 +0.7
681,619 - Pf1N1B4_590 0.81 +0.6
681,619 - Pf1N1B4_590 0.81 +0.6
681,622 + Pf1N1B4_590 0.82 -0.2
681,622 + Pf1N1B4_590 0.82 -0.3
681,622 + Pf1N1B4_590 0.82 -2.2
681,622 + Pf1N1B4_590 0.82 +0.2
681,622 + -0.4
681,622 + Pf1N1B4_590 0.82 +1.4
681,622 + Pf1N1B4_590 0.82 +1.1
681,622 + Pf1N1B4_590 0.82 -0.1
681,622 + Pf1N1B4_590 0.82 -0.6
681,622 + Pf1N1B4_590 0.82 +0.0
681,622 + +0.6
681,622 + Pf1N1B4_590 0.82 +1.2
681,622 + Pf1N1B4_590 0.82 +0.8
681,622 + Pf1N1B4_590 0.82 +0.2
681,622 + Pf1N1B4_590 0.82 +1.5
681,622 + Pf1N1B4_590 0.82 +1.1
681,622 + Pf1N1B4_590 0.82 +0.6
681,622 + Pf1N1B4_590 0.82 +0.6
681,622 + +0.9
681,622 + Pf1N1B4_590 0.82 +1.6
681,622 + Pf1N1B4_590 0.82 +0.6
681,622 + Pf1N1B4_590 0.82 +1.9
681,622 + Pf1N1B4_590 0.82 -0.6
681,622 + Pf1N1B4_590 0.82 -0.8
681,622 + Pf1N1B4_590 0.82 +1.9
681,622 + Pf1N1B4_590 0.82 +0.9
681,623 - Pf1N1B4_590 0.82 -0.4
681,623 - Pf1N1B4_590 0.82 +0.8
681,623 - Pf1N1B4_590 0.82 +2.6
681,623 - Pf1N1B4_590 0.82 +1.2
681,623 - Pf1N1B4_590 0.82 +0.5
681,623 - Pf1N1B4_590 0.82 -0.8
681,623 - Pf1N1B4_590 0.82 +0.5
681,623 - Pf1N1B4_590 0.82 +0.6
681,623 - Pf1N1B4_590 0.82 -0.4
681,623 - Pf1N1B4_590 0.82 +0.8
681,623 - Pf1N1B4_590 0.82 +0.0
681,623 - Pf1N1B4_590 0.82 +1.2
681,623 - Pf1N1B4_590 0.82 +0.6
681,623 - Pf1N1B4_590 0.82 +1.1
681,623 - Pf1N1B4_590 0.82 -0.3
681,623 - Pf1N1B4_590 0.82 +0.5
681,623 - Pf1N1B4_590 0.82 -1.0
681,623 - Pf1N1B4_590 0.82 -1.7
681,623 - Pf1N1B4_590 0.82 +0.8
681,623 - Pf1N1B4_590 0.82 +0.3
681,623 - Pf1N1B4_590 0.82 +0.0
681,623 - Pf1N1B4_590 0.82 -0.0
681,623 - Pf1N1B4_590 0.82 +1.4
681,623 - Pf1N1B4_590 0.82 +1.4
681,623 - Pf1N1B4_590 0.82 +0.8
681,623 - Pf1N1B4_590 0.82 +1.3
681,623 - Pf1N1B4_590 0.82 -0.7
681,623 - Pf1N1B4_590 0.82 -1.7
681,623 - Pf1N1B4_590 0.82 -0.0
681,623 - Pf1N1B4_590 0.82 +2.2
681,623 - Pf1N1B4_590 0.82 +0.2
681,623 - Pf1N1B4_590 0.82 +1.5
681,623 - Pf1N1B4_590 0.82 +0.6
681,623 - Pf1N1B4_590 0.82 +0.2
681,623 - Pf1N1B4_590 0.82 +0.6
681,623 - Pf1N1B4_590 0.82 +1.7
681,623 - Pf1N1B4_590 0.82 +1.0
681,623 - Pf1N1B4_590 0.82 +0.4
681,624 + Pf1N1B4_590 0.82 -0.4
681,624 + Pf1N1B4_590 0.82 +0.6
681,624 + Pf1N1B4_590 0.82 +1.0
681,625 - Pf1N1B4_590 0.82 +1.6
681,774 + +0.6
681,774 + -0.5
681,774 + -2.4
681,774 + -1.0
681,775 - +0.6
681,778 + +1.3
681,779 - -0.4
682,007 - Pf1N1B4_591 0.14 -0.5
682,007 - -1.0
682,269 + Pf1N1B4_591 0.44 -0.8
682,269 + Pf1N1B4_591 0.44 -1.4
682,396 + Pf1N1B4_591 0.58 -1.1
682,397 - Pf1N1B4_591 0.58 -0.4
682,397 - Pf1N1B4_591 0.58 -1.6
682,397 - Pf1N1B4_591 0.58 -0.5
682,397 - Pf1N1B4_591 0.58 -1.8
682,397 - Pf1N1B4_591 0.58 -1.7
682,742 - -1.4
682,843 + +2.2
682,843 + -2.4
682,843 + -1.2
682,843 + -0.8
682,843 + -2.8
682,965 + +0.9
682,965 + -0.1
682,965 + -1.1
682,965 + -1.4
682,966 - +0.8
682,966 - -0.4
682,966 - +2.5
682,966 - +2.7
682,966 - -2.0
683,066 + -1.0
683,066 + -0.4
683,066 + +0.3
683,066 + -1.4
683,066 + -0.2
683,067 - -0.4
683,067 - +1.6
683,067 - +1.3
683,067 - -1.0
683,067 - +0.4
683,067 - +1.7
683,067 - +1.1
683,067 - -0.4
683,067 - -1.8
683,067 - +0.3
683,067 - +2.4
683,067 - -0.3
683,067 - +2.2
683,067 - +0.3
683,067 - +0.8
683,067 - +0.0
683,067 - +0.9
683,067 - -1.4
683,076 + -0.2
683,115 - +2.0
683,115 - +0.6
683,115 - +0.8
683,115 - +0.1
683,127 - Pf1N1B4_592 0.10 -2.0
683,127 - Pf1N1B4_592 0.10 +0.6
683,133 - Pf1N1B4_592 0.11 -0.4
683,133 - Pf1N1B4_592 0.11 +0.6
683,133 - Pf1N1B4_592 0.11 -0.8
683,171 + Pf1N1B4_592 0.13 +0.6
683,171 + Pf1N1B4_592 0.13 +0.0
683,172 - Pf1N1B4_592 0.14 -0.2
683,172 - Pf1N1B4_592 0.14 +0.3
683,269 - Pf1N1B4_592 0.21 +0.2
683,294 + Pf1N1B4_592 0.23 -1.0
683,294 + Pf1N1B4_592 0.23 -1.4
683,295 - -1.4
683,295 - Pf1N1B4_592 0.23 +2.0
683,295 - Pf1N1B4_592 0.23 +0.2
683,295 - Pf1N1B4_592 0.23 +0.5
683,315 + Pf1N1B4_592 0.24 +0.6
683,315 + Pf1N1B4_592 0.24 +0.6
683,315 + Pf1N1B4_592 0.24 -1.1
683,316 - Pf1N1B4_592 0.24 -0.4
683,316 - Pf1N1B4_592 0.24 +0.5
683,316 - Pf1N1B4_592 0.24 +1.5
683,429 + Pf1N1B4_592 0.33 +0.3
683,457 - Pf1N1B4_592 0.35 +0.5
683,531 + Pf1N1B4_592 0.40 +1.8
683,531 + Pf1N1B4_592 0.40 -1.4
683,531 + Pf1N1B4_592 0.40 -0.7
683,531 + -0.4
683,531 + Pf1N1B4_592 0.40 -0.5
683,532 - Pf1N1B4_592 0.40 +1.9
683,532 - Pf1N1B4_592 0.40 +1.3
683,532 - Pf1N1B4_592 0.40 -1.3
683,547 - Pf1N1B4_592 0.41 +0.4
683,614 - Pf1N1B4_592 0.46 +0.6
683,672 + Pf1N1B4_592 0.51 -1.0
683,672 + Pf1N1B4_592 0.51 -0.7
683,690 + Pf1N1B4_592 0.52 -0.4
683,691 - Pf1N1B4_592 0.52 -0.5
683,691 - Pf1N1B4_592 0.52 +0.6
683,711 + Pf1N1B4_592 0.54 +0.6
683,711 + Pf1N1B4_592 0.54 -0.8
683,712 - Pf1N1B4_592 0.54 +1.5
683,712 - Pf1N1B4_592 0.54 -0.5
683,712 - Pf1N1B4_592 0.54 +1.1
683,712 - Pf1N1B4_592 0.54 +1.0
683,712 - Pf1N1B4_592 0.54 +1.3

Or see this region's nucleotide sequence