Experiment: Gentamicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5058 and Pf1N1B4_5059 are separated by 106 nucleotides Pf1N1B4_5059 and Pf1N1B4_5060 are separated by 182 nucleotides
Pf1N1B4_5058 - D-galactarate permease, at 5,602,346 to 5,603,743
_5058
Pf1N1B4_5059 - Transcriptional regulator, LysR family, at 5,603,850 to 5,604,752
_5059
Pf1N1B4_5060 - Ferrichrome-iron receptor, at 5,604,935 to 5,607,097
_5060
Position (kb) 5603
5604
5605 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5602.947 kb on + strand, within Pf1N1B4_5058 at 5602.948 kb on - strand at 5603.340 kb on + strand at 5603.341 kb on - strand, within Pf1N1B4_5058 at 5603.343 kb on + strand, within Pf1N1B4_5058 at 5603.344 kb on - strand, within Pf1N1B4_5058 at 5603.400 kb on + strand, within Pf1N1B4_5058 at 5603.400 kb on + strand, within Pf1N1B4_5058 at 5603.506 kb on + strand, within Pf1N1B4_5058 at 5603.507 kb on - strand, within Pf1N1B4_5058 at 5603.637 kb on + strand at 5603.637 kb on + strand at 5603.638 kb on - strand at 5603.731 kb on + strand at 5604.432 kb on + strand, within Pf1N1B4_5059 at 5604.433 kb on - strand, within Pf1N1B4_5059 at 5604.507 kb on + strand, within Pf1N1B4_5059 at 5604.825 kb on + strand at 5604.825 kb on + strand at 5604.825 kb on + strand at 5604.826 kb on - strand at 5604.907 kb on + strand at 5604.908 kb on - strand at 5605.060 kb on + strand at 5605.194 kb on + strand, within Pf1N1B4_5060 at 5605.227 kb on - strand, within Pf1N1B4_5060 at 5605.293 kb on - strand, within Pf1N1B4_5060 at 5605.293 kb on - strand, within Pf1N1B4_5060 at 5605.421 kb on + strand at 5605.421 kb on + strand, within Pf1N1B4_5060 at 5605.422 kb on - strand, within Pf1N1B4_5060 at 5605.574 kb on + strand, within Pf1N1B4_5060 at 5605.574 kb on + strand at 5605.575 kb on - strand, within Pf1N1B4_5060
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.001 mg/ml remove 5,602,947 + Pf1N1B4_5058 0.43 +1.4 5,602,948 - -1.0 5,603,340 + -1.0 5,603,341 - Pf1N1B4_5058 0.71 -0.6 5,603,343 + Pf1N1B4_5058 0.71 +0.6 5,603,344 - Pf1N1B4_5058 0.71 -2.0 5,603,400 + Pf1N1B4_5058 0.75 -1.0 5,603,400 + Pf1N1B4_5058 0.75 +2.0 5,603,506 + Pf1N1B4_5058 0.83 +0.5 5,603,507 - Pf1N1B4_5058 0.83 +0.4 5,603,637 + -2.4 5,603,637 + +1.0 5,603,638 - -0.8 5,603,731 + -1.6 5,604,432 + Pf1N1B4_5059 0.64 -0.3 5,604,433 - Pf1N1B4_5059 0.65 -1.4 5,604,507 + Pf1N1B4_5059 0.73 -2.6 5,604,825 + +0.4 5,604,825 + +0.7 5,604,825 + -0.0 5,604,826 - -1.5 5,604,907 + -1.0 5,604,908 - -0.9 5,605,060 + -1.4 5,605,194 + Pf1N1B4_5060 0.12 -1.0 5,605,227 - Pf1N1B4_5060 0.13 -0.7 5,605,293 - Pf1N1B4_5060 0.17 -1.9 5,605,293 - Pf1N1B4_5060 0.17 +1.0 5,605,421 + -1.0 5,605,421 + Pf1N1B4_5060 0.22 -1.8 5,605,422 - Pf1N1B4_5060 0.23 -0.3 5,605,574 + Pf1N1B4_5060 0.30 -1.6 5,605,574 + -2.0 5,605,575 - Pf1N1B4_5060 0.30 -0.5
Or see this region's nucleotide sequence