Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_481

Experiment: Gentamicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_480 and Pf1N1B4_481 are separated by 100 nucleotidesPf1N1B4_481 and Pf1N1B4_482 are separated by 196 nucleotides Pf1N1B4_480 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 570,930 to 573,119 _480 Pf1N1B4_481 - FIG00956241: hypothetical protein, at 573,220 to 573,627 _481 Pf1N1B4_482 - Transcriptional regulator, LysR family, at 573,824 to 574,822 _482 Position (kb) 573 574Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 572.416 kb on - strand, within Pf1N1B4_480at 572.533 kb on + strand, within Pf1N1B4_480at 572.533 kb on + strand, within Pf1N1B4_480at 572.533 kb on + strand, within Pf1N1B4_480at 572.533 kb on + strand, within Pf1N1B4_480at 572.533 kb on + strand, within Pf1N1B4_480at 572.533 kb on + strand, within Pf1N1B4_480at 572.533 kb on + strand, within Pf1N1B4_480at 572.534 kb on - strand, within Pf1N1B4_480at 572.534 kb on - strand, within Pf1N1B4_480at 572.534 kb on - strand, within Pf1N1B4_480at 572.542 kb on - strand, within Pf1N1B4_480at 572.547 kb on + strand, within Pf1N1B4_480at 572.548 kb on - strand, within Pf1N1B4_480at 572.548 kb on - strand, within Pf1N1B4_480at 572.600 kb on + strand, within Pf1N1B4_480at 572.600 kb on + strand, within Pf1N1B4_480at 572.692 kb on + strand, within Pf1N1B4_480at 572.693 kb on - strand, within Pf1N1B4_480at 572.693 kb on - strand, within Pf1N1B4_480at 572.693 kb on - strand, within Pf1N1B4_480at 572.822 kb on - strand, within Pf1N1B4_480at 573.095 kb on - strandat 573.153 kb on + strandat 573.153 kb on + strandat 573.153 kb on + strandat 573.154 kb on - strandat 573.154 kb on - strandat 573.156 kb on + strandat 573.156 kb on + strandat 573.156 kb on + strandat 573.156 kb on + strandat 573.156 kb on + strandat 573.156 kb on + strandat 573.157 kb on - strandat 573.157 kb on - strandat 573.157 kb on - strandat 573.157 kb on - strandat 573.157 kb on - strandat 573.157 kb on - strandat 573.157 kb on - strandat 573.181 kb on + strandat 573.181 kb on + strandat 573.181 kb on + strandat 573.182 kb on - strandat 573.182 kb on - strandat 573.183 kb on + strandat 573.183 kb on + strandat 573.183 kb on + strandat 573.184 kb on - strandat 573.184 kb on - strandat 573.184 kb on - strandat 573.184 kb on - strandat 573.184 kb on - strandat 573.214 kb on + strandat 573.214 kb on + strandat 573.214 kb on + strandat 573.214 kb on + strandat 573.215 kb on - strandat 573.215 kb on - strandat 573.215 kb on - strandat 573.215 kb on - strandat 573.284 kb on + strand, within Pf1N1B4_481at 573.285 kb on - strand, within Pf1N1B4_481at 573.285 kb on - strand, within Pf1N1B4_481at 573.285 kb on - strand, within Pf1N1B4_481at 573.386 kb on - strand, within Pf1N1B4_481at 573.466 kb on + strand, within Pf1N1B4_481at 573.466 kb on + strand, within Pf1N1B4_481at 573.466 kb on + strandat 573.490 kb on + strand, within Pf1N1B4_481at 573.490 kb on + strand, within Pf1N1B4_481at 573.490 kb on + strand, within Pf1N1B4_481at 573.490 kb on + strand, within Pf1N1B4_481at 573.490 kb on + strand, within Pf1N1B4_481at 573.490 kb on + strand, within Pf1N1B4_481at 573.490 kb on + strand, within Pf1N1B4_481at 573.490 kb on + strand, within Pf1N1B4_481at 573.491 kb on - strandat 573.491 kb on - strand, within Pf1N1B4_481at 573.491 kb on - strand, within Pf1N1B4_481at 573.491 kb on - strand, within Pf1N1B4_481at 573.491 kb on - strand, within Pf1N1B4_481at 573.491 kb on - strand, within Pf1N1B4_481at 573.491 kb on - strand, within Pf1N1B4_481at 573.517 kb on + strand, within Pf1N1B4_481at 573.593 kb on + strandat 573.662 kb on + strandat 573.663 kb on - strandat 573.855 kb on + strandat 573.855 kb on + strandat 573.855 kb on + strandat 573.856 kb on - strandat 573.856 kb on - strandat 573.937 kb on - strand, within Pf1N1B4_482at 574.083 kb on + strand, within Pf1N1B4_482at 574.233 kb on + strand, within Pf1N1B4_482at 574.233 kb on + strand, within Pf1N1B4_482at 574.234 kb on - strand, within Pf1N1B4_482at 574.234 kb on - strand, within Pf1N1B4_482at 574.237 kb on + strand, within Pf1N1B4_482at 574.237 kb on + strand, within Pf1N1B4_482at 574.238 kb on - strand, within Pf1N1B4_482at 574.238 kb on - strand, within Pf1N1B4_482at 574.238 kb on - strand, within Pf1N1B4_482at 574.238 kb on - strand, within Pf1N1B4_482at 574.238 kb on - strand, within Pf1N1B4_482at 574.238 kb on - strand, within Pf1N1B4_482at 574.238 kb on - strand, within Pf1N1B4_482at 574.238 kb on - strand, within Pf1N1B4_482at 574.313 kb on + strand, within Pf1N1B4_482at 574.313 kb on + strand, within Pf1N1B4_482at 574.314 kb on - strand, within Pf1N1B4_482at 574.314 kb on - strand, within Pf1N1B4_482at 574.314 kb on - strand, within Pf1N1B4_482

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.001 mg/ml
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572,416 - Pf1N1B4_480 0.68 -0.7
572,533 + Pf1N1B4_480 0.73 -0.2
572,533 + Pf1N1B4_480 0.73 -2.0
572,533 + Pf1N1B4_480 0.73 +0.6
572,533 + Pf1N1B4_480 0.73 -1.0
572,533 + Pf1N1B4_480 0.73 -1.7
572,533 + Pf1N1B4_480 0.73 -0.5
572,533 + Pf1N1B4_480 0.73 -1.4
572,534 - Pf1N1B4_480 0.73 +0.4
572,534 - Pf1N1B4_480 0.73 -0.6
572,534 - Pf1N1B4_480 0.73 +0.6
572,542 - Pf1N1B4_480 0.74 -1.2
572,547 + Pf1N1B4_480 0.74 -0.4
572,548 - Pf1N1B4_480 0.74 +0.6
572,548 - Pf1N1B4_480 0.74 -0.1
572,600 + Pf1N1B4_480 0.76 -0.8
572,600 + Pf1N1B4_480 0.76 +0.8
572,692 + Pf1N1B4_480 0.80 -1.7
572,693 - Pf1N1B4_480 0.81 +0.9
572,693 - Pf1N1B4_480 0.81 -0.7
572,693 - Pf1N1B4_480 0.81 -0.4
572,822 - Pf1N1B4_480 0.86 -0.4
573,095 - +0.0
573,153 + -1.0
573,153 + -0.7
573,153 + -0.6
573,154 - -1.0
573,154 - -0.9
573,156 + -1.4
573,156 + +0.9
573,156 + +0.6
573,156 + -1.4
573,156 + -0.3
573,156 + +2.6
573,157 - -1.1
573,157 - +1.3
573,157 - -0.8
573,157 - +0.6
573,157 - -2.0
573,157 - +0.8
573,157 - +1.8
573,181 + +0.6
573,181 + +0.7
573,181 + +0.6
573,182 - +1.2
573,182 - -0.7
573,183 + +0.9
573,183 + +0.6
573,183 + -0.4
573,184 - -0.4
573,184 - +0.6
573,184 - +0.6
573,184 - +1.4
573,184 - -0.1
573,214 + +1.4
573,214 + -0.4
573,214 + +0.6
573,214 + +0.3
573,215 - -1.2
573,215 - -1.2
573,215 - -0.9
573,215 - -0.8
573,284 + Pf1N1B4_481 0.16 -1.1
573,285 - Pf1N1B4_481 0.16 -1.0
573,285 - Pf1N1B4_481 0.16 +0.6
573,285 - Pf1N1B4_481 0.16 +0.3
573,386 - Pf1N1B4_481 0.41 -0.7
573,466 + Pf1N1B4_481 0.60 +0.6
573,466 + Pf1N1B4_481 0.60 -0.8
573,466 + +0.6
573,490 + Pf1N1B4_481 0.66 +0.3
573,490 + Pf1N1B4_481 0.66 -1.7
573,490 + Pf1N1B4_481 0.66 +0.0
573,490 + Pf1N1B4_481 0.66 -1.6
573,490 + Pf1N1B4_481 0.66 -0.8
573,490 + Pf1N1B4_481 0.66 +0.1
573,490 + Pf1N1B4_481 0.66 -0.6
573,490 + Pf1N1B4_481 0.66 -1.0
573,491 - -1.0
573,491 - Pf1N1B4_481 0.66 +0.3
573,491 - Pf1N1B4_481 0.66 +1.0
573,491 - Pf1N1B4_481 0.66 +0.0
573,491 - Pf1N1B4_481 0.66 -0.8
573,491 - Pf1N1B4_481 0.66 -0.4
573,491 - Pf1N1B4_481 0.66 -1.9
573,517 + Pf1N1B4_481 0.73 +1.9
573,593 + +0.1
573,662 + +0.8
573,663 - -0.4
573,855 + -0.7
573,855 + +0.6
573,855 + +1.2
573,856 - +1.8
573,856 - -2.4
573,937 - Pf1N1B4_482 0.11 -3.0
574,083 + Pf1N1B4_482 0.26 -0.2
574,233 + Pf1N1B4_482 0.41 +0.0
574,233 + Pf1N1B4_482 0.41 +0.1
574,234 - Pf1N1B4_482 0.41 +2.2
574,234 - Pf1N1B4_482 0.41 +0.3
574,237 + Pf1N1B4_482 0.41 -0.4
574,237 + Pf1N1B4_482 0.41 -0.5
574,238 - Pf1N1B4_482 0.41 -0.3
574,238 - Pf1N1B4_482 0.41 +1.3
574,238 - Pf1N1B4_482 0.41 +1.0
574,238 - Pf1N1B4_482 0.41 -0.6
574,238 - Pf1N1B4_482 0.41 +0.1
574,238 - Pf1N1B4_482 0.41 -1.6
574,238 - Pf1N1B4_482 0.41 +0.6
574,238 - Pf1N1B4_482 0.41 +1.6
574,313 + Pf1N1B4_482 0.49 +0.3
574,313 + Pf1N1B4_482 0.49 -1.1
574,314 - Pf1N1B4_482 0.49 +2.6
574,314 - Pf1N1B4_482 0.49 -2.4
574,314 - Pf1N1B4_482 0.49 -0.4

Or see this region's nucleotide sequence