Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_416

Experiment: Gentamicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_415 and Pf1N1B4_416 are separated by 57 nucleotidesPf1N1B4_416 and Pf1N1B4_417 are separated by 16 nucleotidesPf1N1B4_417 and Pf1N1B4_418 are separated by 216 nucleotides Pf1N1B4_415 - Lipase precursor (EC 3.1.1.3), at 484,593 to 485,471 _415 Pf1N1B4_416 - FIG003620: Proteophosphoglycan precursor (Fragment), at 485,529 to 486,089 _416 Pf1N1B4_417 - lipoprotein, putative, at 486,106 to 486,711 _417 Pf1N1B4_418 - Molybdenum cofactor biosynthesis protein MoaA, at 486,928 to 487,896 _418 Position (kb) 485 486 487Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 484.588 kb on + strandat 484.588 kb on + strandat 484.589 kb on - strandat 484.592 kb on + strandat 484.592 kb on + strandat 484.592 kb on + strandat 484.592 kb on + strandat 484.592 kb on + strandat 484.593 kb on - strandat 484.617 kb on - strandat 484.624 kb on - strandat 484.624 kb on - strandat 484.680 kb on + strandat 484.870 kb on - strand, within Pf1N1B4_415at 484.874 kb on - strandat 484.996 kb on + strand, within Pf1N1B4_415at 485.124 kb on + strand, within Pf1N1B4_415at 485.124 kb on + strand, within Pf1N1B4_415at 485.125 kb on - strand, within Pf1N1B4_415at 485.184 kb on + strand, within Pf1N1B4_415at 485.184 kb on + strandat 485.184 kb on + strand, within Pf1N1B4_415at 485.184 kb on + strand, within Pf1N1B4_415at 485.184 kb on + strand, within Pf1N1B4_415at 485.184 kb on + strand, within Pf1N1B4_415at 485.184 kb on + strand, within Pf1N1B4_415at 485.184 kb on + strandat 485.185 kb on - strand, within Pf1N1B4_415at 485.185 kb on - strand, within Pf1N1B4_415at 485.185 kb on - strand, within Pf1N1B4_415at 485.187 kb on + strandat 485.187 kb on + strand, within Pf1N1B4_415at 485.187 kb on + strand, within Pf1N1B4_415at 485.187 kb on + strand, within Pf1N1B4_415at 485.187 kb on + strand, within Pf1N1B4_415at 485.188 kb on - strand, within Pf1N1B4_415at 485.188 kb on - strand, within Pf1N1B4_415at 485.188 kb on - strand, within Pf1N1B4_415at 485.188 kb on - strand, within Pf1N1B4_415at 485.188 kb on - strand, within Pf1N1B4_415at 485.188 kb on - strand, within Pf1N1B4_415at 485.190 kb on + strand, within Pf1N1B4_415at 485.190 kb on + strand, within Pf1N1B4_415at 485.190 kb on + strand, within Pf1N1B4_415at 485.190 kb on + strand, within Pf1N1B4_415at 485.191 kb on - strandat 485.209 kb on + strand, within Pf1N1B4_415at 485.258 kb on + strand, within Pf1N1B4_415at 485.259 kb on - strand, within Pf1N1B4_415at 485.259 kb on - strand, within Pf1N1B4_415at 485.280 kb on + strand, within Pf1N1B4_415at 485.280 kb on + strand, within Pf1N1B4_415at 485.280 kb on + strandat 485.319 kb on + strand, within Pf1N1B4_415at 485.430 kb on + strandat 485.431 kb on - strandat 485.460 kb on - strandat 485.460 kb on - strandat 485.469 kb on + strandat 485.470 kb on - strandat 485.630 kb on - strand, within Pf1N1B4_416at 485.630 kb on - strand, within Pf1N1B4_416at 485.630 kb on - strand, within Pf1N1B4_416at 485.630 kb on - strand, within Pf1N1B4_416at 485.680 kb on + strand, within Pf1N1B4_416at 485.681 kb on - strand, within Pf1N1B4_416at 485.724 kb on - strand, within Pf1N1B4_416at 485.724 kb on - strand, within Pf1N1B4_416at 485.878 kb on + strand, within Pf1N1B4_416at 485.879 kb on - strand, within Pf1N1B4_416at 485.879 kb on - strand, within Pf1N1B4_416at 485.879 kb on - strand, within Pf1N1B4_416at 485.879 kb on - strand, within Pf1N1B4_416at 485.879 kb on - strandat 485.953 kb on + strand, within Pf1N1B4_416at 485.953 kb on + strand, within Pf1N1B4_416at 485.954 kb on - strand, within Pf1N1B4_416at 485.954 kb on - strand, within Pf1N1B4_416at 485.954 kb on - strand, within Pf1N1B4_416at 485.956 kb on + strandat 485.956 kb on + strand, within Pf1N1B4_416at 485.957 kb on - strand, within Pf1N1B4_416at 485.957 kb on - strand, within Pf1N1B4_416at 485.957 kb on - strand, within Pf1N1B4_416at 485.957 kb on - strand, within Pf1N1B4_416at 486.107 kb on + strandat 486.108 kb on - strandat 486.141 kb on - strandat 486.196 kb on + strand, within Pf1N1B4_417at 486.216 kb on + strand, within Pf1N1B4_417at 486.216 kb on + strand, within Pf1N1B4_417at 486.216 kb on + strand, within Pf1N1B4_417at 486.217 kb on - strand, within Pf1N1B4_417at 486.226 kb on - strand, within Pf1N1B4_417at 486.236 kb on + strand, within Pf1N1B4_417at 486.365 kb on + strand, within Pf1N1B4_417at 486.365 kb on + strand, within Pf1N1B4_417at 486.365 kb on + strandat 486.365 kb on + strand, within Pf1N1B4_417at 486.374 kb on + strand, within Pf1N1B4_417at 486.455 kb on + strand, within Pf1N1B4_417at 486.455 kb on + strand, within Pf1N1B4_417at 486.456 kb on - strand, within Pf1N1B4_417at 486.495 kb on + strand, within Pf1N1B4_417at 486.495 kb on + strand, within Pf1N1B4_417at 486.496 kb on - strand, within Pf1N1B4_417at 486.496 kb on - strand, within Pf1N1B4_417at 486.545 kb on + strand, within Pf1N1B4_417at 486.545 kb on + strand, within Pf1N1B4_417at 486.545 kb on + strand, within Pf1N1B4_417at 486.545 kb on + strand, within Pf1N1B4_417at 486.549 kb on + strand, within Pf1N1B4_417at 486.550 kb on - strand, within Pf1N1B4_417at 486.576 kb on + strand, within Pf1N1B4_417at 486.714 kb on + strandat 486.715 kb on - strandat 486.715 kb on - strandat 486.783 kb on + strandat 486.784 kb on - strandat 486.784 kb on - strandat 486.784 kb on - strandat 486.940 kb on - strandat 486.940 kb on - strandat 487.045 kb on - strand, within Pf1N1B4_418at 487.064 kb on + strand, within Pf1N1B4_418at 487.064 kb on + strand, within Pf1N1B4_418at 487.064 kb on + strand, within Pf1N1B4_418at 487.064 kb on + strand, within Pf1N1B4_418at 487.065 kb on - strand, within Pf1N1B4_418at 487.065 kb on - strand, within Pf1N1B4_418at 487.065 kb on - strand, within Pf1N1B4_418at 487.065 kb on - strand, within Pf1N1B4_418at 487.065 kb on - strand, within Pf1N1B4_418at 487.065 kb on - strand, within Pf1N1B4_418

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.001 mg/ml
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484,588 + -0.3
484,588 + +0.3
484,589 - +1.4
484,592 + +1.5
484,592 + -0.2
484,592 + +0.9
484,592 + +0.4
484,592 + -0.3
484,593 - +0.5
484,617 - +0.3
484,624 - -1.0
484,624 - -0.5
484,680 + -0.5
484,870 - Pf1N1B4_415 0.32 -0.4
484,874 - +0.5
484,996 + Pf1N1B4_415 0.46 -1.0
485,124 + Pf1N1B4_415 0.60 -3.0
485,124 + Pf1N1B4_415 0.60 +0.9
485,125 - Pf1N1B4_415 0.61 -0.2
485,184 + Pf1N1B4_415 0.67 -0.7
485,184 + +2.3
485,184 + Pf1N1B4_415 0.67 +0.9
485,184 + Pf1N1B4_415 0.67 -1.3
485,184 + Pf1N1B4_415 0.67 -0.6
485,184 + Pf1N1B4_415 0.67 +1.0
485,184 + Pf1N1B4_415 0.67 +0.3
485,184 + -1.5
485,185 - Pf1N1B4_415 0.67 -1.5
485,185 - Pf1N1B4_415 0.67 -0.5
485,185 - Pf1N1B4_415 0.67 +0.8
485,187 + -1.8
485,187 + Pf1N1B4_415 0.68 -1.8
485,187 + Pf1N1B4_415 0.68 +0.5
485,187 + Pf1N1B4_415 0.68 +1.0
485,187 + Pf1N1B4_415 0.68 +1.8
485,188 - Pf1N1B4_415 0.68 -1.0
485,188 - Pf1N1B4_415 0.68 -0.2
485,188 - Pf1N1B4_415 0.68 -2.5
485,188 - Pf1N1B4_415 0.68 +1.5
485,188 - Pf1N1B4_415 0.68 -1.0
485,188 - Pf1N1B4_415 0.68 -0.6
485,190 + Pf1N1B4_415 0.68 -1.8
485,190 + Pf1N1B4_415 0.68 -0.7
485,190 + Pf1N1B4_415 0.68 -1.8
485,190 + Pf1N1B4_415 0.68 -0.2
485,191 - +1.1
485,209 + Pf1N1B4_415 0.70 -0.8
485,258 + Pf1N1B4_415 0.76 +1.3
485,259 - Pf1N1B4_415 0.76 +0.5
485,259 - Pf1N1B4_415 0.76 +0.8
485,280 + Pf1N1B4_415 0.78 +0.3
485,280 + Pf1N1B4_415 0.78 +1.2
485,280 + -1.3
485,319 + Pf1N1B4_415 0.83 -0.0
485,430 + -0.5
485,431 - -1.0
485,460 - +0.9
485,460 - +1.9
485,469 + -1.0
485,470 - -1.5
485,630 - Pf1N1B4_416 0.18 -1.9
485,630 - Pf1N1B4_416 0.18 -1.5
485,630 - Pf1N1B4_416 0.18 -0.7
485,630 - Pf1N1B4_416 0.18 -0.1
485,680 + Pf1N1B4_416 0.27 +0.5
485,681 - Pf1N1B4_416 0.27 -2.5
485,724 - Pf1N1B4_416 0.35 -2.3
485,724 - Pf1N1B4_416 0.35 -0.5
485,878 + Pf1N1B4_416 0.62 -3.4
485,879 - Pf1N1B4_416 0.62 -0.5
485,879 - Pf1N1B4_416 0.62 +1.3
485,879 - Pf1N1B4_416 0.62 -2.5
485,879 - Pf1N1B4_416 0.62 +0.5
485,879 - -0.5
485,953 + Pf1N1B4_416 0.76 -0.7
485,953 + Pf1N1B4_416 0.76 +0.6
485,954 - Pf1N1B4_416 0.76 -2.5
485,954 - Pf1N1B4_416 0.76 -1.8
485,954 - Pf1N1B4_416 0.76 -1.5
485,956 + +0.5
485,956 + Pf1N1B4_416 0.76 -0.5
485,957 - Pf1N1B4_416 0.76 -2.0
485,957 - Pf1N1B4_416 0.76 -1.0
485,957 - Pf1N1B4_416 0.76 -0.6
485,957 - Pf1N1B4_416 0.76 -2.0
486,107 + -0.5
486,108 - +0.5
486,141 - +0.0
486,196 + Pf1N1B4_417 0.15 +0.2
486,216 + Pf1N1B4_417 0.18 -1.8
486,216 + Pf1N1B4_417 0.18 -1.5
486,216 + Pf1N1B4_417 0.18 -0.0
486,217 - Pf1N1B4_417 0.18 -1.5
486,226 - Pf1N1B4_417 0.20 -0.7
486,236 + Pf1N1B4_417 0.21 +0.7
486,365 + Pf1N1B4_417 0.43 -1.0
486,365 + Pf1N1B4_417 0.43 -0.7
486,365 + -1.0
486,365 + Pf1N1B4_417 0.43 -0.2
486,374 + Pf1N1B4_417 0.44 +0.5
486,455 + Pf1N1B4_417 0.58 -1.3
486,455 + Pf1N1B4_417 0.58 +0.5
486,456 - Pf1N1B4_417 0.58 -0.9
486,495 + Pf1N1B4_417 0.64 +0.5
486,495 + Pf1N1B4_417 0.64 +0.8
486,496 - Pf1N1B4_417 0.64 -1.1
486,496 - Pf1N1B4_417 0.64 -0.5
486,545 + Pf1N1B4_417 0.72 -1.5
486,545 + Pf1N1B4_417 0.72 +0.5
486,545 + Pf1N1B4_417 0.72 +1.3
486,545 + Pf1N1B4_417 0.72 +1.3
486,549 + Pf1N1B4_417 0.73 -1.7
486,550 - Pf1N1B4_417 0.73 -1.0
486,576 + Pf1N1B4_417 0.78 -0.7
486,714 + -1.0
486,715 - +0.2
486,715 - +0.5
486,783 + +0.5
486,784 - -0.5
486,784 - -0.2
486,784 - +0.3
486,940 - +1.3
486,940 - -0.9
487,045 - Pf1N1B4_418 0.12 +0.2
487,064 + Pf1N1B4_418 0.14 -0.5
487,064 + Pf1N1B4_418 0.14 +1.3
487,064 + Pf1N1B4_418 0.14 -0.6
487,064 + Pf1N1B4_418 0.14 +2.5
487,065 - Pf1N1B4_418 0.14 -1.0
487,065 - Pf1N1B4_418 0.14 -0.7
487,065 - Pf1N1B4_418 0.14 -2.5
487,065 - Pf1N1B4_418 0.14 +1.3
487,065 - Pf1N1B4_418 0.14 +2.1
487,065 - Pf1N1B4_418 0.14 +0.5

Or see this region's nucleotide sequence