Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3489

Experiment: Gentamicin 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.001 mg/ml
3,896,202	+		Pf1N1B4_3488	0.30	+0.2
3,896,202	+		Pf1N1B4_3488	0.30	-0.7
3,896,202	+		Pf1N1B4_3488	0.30	+0.6
3,896,202	+		Pf1N1B4_3488	0.30	-1.2
3,896,202	+		Pf1N1B4_3488	0.30	-0.7
3,896,202	+				+1.2
3,896,202	+		Pf1N1B4_3488	0.30	+2.1
3,896,202	+		Pf1N1B4_3488	0.30	-0.1
3,896,202	+		Pf1N1B4_3488	0.30	+1.4
3,896,203	-		Pf1N1B4_3488	0.30	-0.8
3,896,203	-		Pf1N1B4_3488	0.30	-1.0
3,896,203	-		Pf1N1B4_3488	0.30	+1.4
3,896,238	+		Pf1N1B4_3488	0.33	+0.8
3,896,238	+		Pf1N1B4_3488	0.33	+1.0
3,896,239	-		Pf1N1B4_3488	0.33	-0.6
3,896,239	-		Pf1N1B4_3488	0.33	-0.1
3,896,268	+		Pf1N1B4_3488	0.36	-0.6
3,896,269	-		Pf1N1B4_3488	0.36	-1.4
3,896,269	-		Pf1N1B4_3488	0.36	+0.3
3,896,295	+		Pf1N1B4_3488	0.38	+0.1
3,896,296	-		Pf1N1B4_3488	0.38	-0.4
3,896,548	-		Pf1N1B4_3488	0.59	-2.0
3,896,548	-		Pf1N1B4_3488	0.59	-1.0
3,896,548	-		Pf1N1B4_3488	0.59	-0.6
3,896,553	+		Pf1N1B4_3488	0.60	-0.4
3,896,553	+		Pf1N1B4_3488	0.60	+0.4
3,896,553	+				+0.6
3,896,554	-		Pf1N1B4_3488	0.60	-0.1
3,896,556	+		Pf1N1B4_3488	0.60	-2.0
3,896,556	+		Pf1N1B4_3488	0.60	-1.4
3,896,724	+		Pf1N1B4_3488	0.74	+0.0
3,896,785	+				+2.4
3,896,785	+		Pf1N1B4_3488	0.80	+1.4
3,896,785	+		Pf1N1B4_3488	0.80	-1.4
3,896,785	+		Pf1N1B4_3488	0.80	-2.7
3,896,785	+		Pf1N1B4_3488	0.80	-0.1
3,896,786	-		Pf1N1B4_3488	0.80	-0.2
3,896,786	-		Pf1N1B4_3488	0.80	-1.2
3,896,786	-				+0.6
3,897,001	+				+0.5
3,897,020	+				+1.4
3,897,020	+				-0.2
3,897,020	+				+0.6
3,897,082	+				+0.1
3,897,165	-				+0.1
3,897,165	-				-0.7
3,897,165	-				-1.6
3,897,296	+		Pf1N1B4_3489	0.27	+0.6
3,897,296	+		Pf1N1B4_3489	0.27	-1.1
3,897,297	-		Pf1N1B4_3489	0.27	-2.0
3,897,297	-		Pf1N1B4_3489	0.27	+0.6
3,897,297	-		Pf1N1B4_3489	0.27	-0.4
3,897,297	-		Pf1N1B4_3489	0.27	+3.2
3,897,297	-		Pf1N1B4_3489	0.27	-0.1
3,897,297	-		Pf1N1B4_3489	0.27	-0.1
3,897,303	-		Pf1N1B4_3489	0.28	+0.2
3,897,303	-		Pf1N1B4_3489	0.28	+2.4
3,897,332	+		Pf1N1B4_3489	0.34	-1.0
3,897,332	+		Pf1N1B4_3489	0.34	-0.2
3,897,332	+		Pf1N1B4_3489	0.34	-1.0
3,897,333	-		Pf1N1B4_3489	0.34	-0.8
3,897,333	-				+0.6
3,897,333	-		Pf1N1B4_3489	0.34	+1.2
3,897,362	+		Pf1N1B4_3489	0.40	-0.4
3,897,758	+				-0.4
3,897,758	+				-0.1
3,897,758	+				-1.7
3,897,758	+				+1.0
3,897,817	+				-0.8
3,897,817	+				-0.9
3,897,818	-				-1.0
3,897,818	-				-0.8
3,897,818	-				+0.2
3,897,818	-				-0.1
3,897,818	-				-1.0
3,897,818	-				-1.4
3,897,825	-				-1.4
3,897,826	+				-1.7
3,897,970	+		Pf1N1B4_3490	0.26	-1.1
3,897,970	+		Pf1N1B4_3490	0.26	+0.2
3,897,970	+		Pf1N1B4_3490	0.26	-0.5
3,897,970	+		Pf1N1B4_3490	0.26	-1.7
3,897,970	+		Pf1N1B4_3490	0.26	-1.6
3,897,970	+		Pf1N1B4_3490	0.26	+0.8
3,897,970	+		Pf1N1B4_3490	0.26	-0.7
3,897,970	+				+1.9
3,897,971	-		Pf1N1B4_3490	0.26	-0.0
3,897,971	-		Pf1N1B4_3490	0.26	-0.8
3,897,971	-		Pf1N1B4_3490	0.26	-0.5
3,897,971	-		Pf1N1B4_3490	0.26	-2.2
3,897,979	+		Pf1N1B4_3490	0.27	-0.1
3,897,979	+		Pf1N1B4_3490	0.27	-1.1
3,897,979	+				-1.4
3,897,980	-		Pf1N1B4_3490	0.27	-0.4
3,897,989	-		Pf1N1B4_3490	0.29	-1.7
3,897,989	-		Pf1N1B4_3490	0.29	+1.2
3,898,078	+		Pf1N1B4_3490	0.43	+0.4
3,898,123	+		Pf1N1B4_3490	0.51	+0.1
3,898,124	-		Pf1N1B4_3490	0.51	+0.6
3,898,124	-		Pf1N1B4_3490	0.51	-1.0
3,898,124	-		Pf1N1B4_3490	0.51	+0.6
3,898,124	-		Pf1N1B4_3490	0.51	-1.0
3,898,124	-		Pf1N1B4_3490	0.51	+0.6
3,898,124	-				+1.6
3,898,187	-		Pf1N1B4_3490	0.62	-3.2
3,898,327	+		Pf1N1B4_3490	0.85	+0.1
3,898,327	+		Pf1N1B4_3490	0.85	-0.2
3,898,328	-		Pf1N1B4_3490	0.85	-1.6
3,898,328	-		Pf1N1B4_3490	0.85	+0.6
3,898,328	-		Pf1N1B4_3490	0.85	+0.6
3,898,328	-		Pf1N1B4_3490	0.85	+0.0
3,898,328	-		Pf1N1B4_3490	0.85	+0.9
3,898,328	-		Pf1N1B4_3490	0.85	-0.3
3,898,328	-				+0.6
3,898,404	+				+0.3
3,898,404	+				+2.2
3,898,404	+				-1.5
3,898,404	+				-0.3
3,898,404	+				-0.4
3,898,404	+				+0.1
3,898,404	+				-1.0
3,898,405	-				-0.4
3,898,405	-				-0.1
3,898,405	-				-1.4
3,898,485	+				+0.6
3,898,485	+				-0.8
3,898,485	+				-1.0
3,898,485	+				+0.2
3,898,485	+				+1.2
3,898,485	+				+0.6
3,898,486	-				-0.4
3,898,486	-				-1.1
3,898,486	-				-0.4
3,898,486	-				-1.0
3,898,486	-				+0.3
3,898,486	-				-1.7
3,898,489	+				+0.6
3,898,490	-				+1.3
3,898,490	-				+3.2
3,898,490	-				-0.1
3,898,490	-				-0.4
3,898,501	+				+0.6
3,898,501	+				-0.1
3,898,505	+				+1.2
3,898,506	-				-0.2
3,898,515	+				+0.1
3,898,527	+				+0.6
3,898,527	+				+2.2
3,898,528	-				-0.9
3,898,528	-				-0.7
3,898,528	-				-1.4
3,898,528	-				-1.0
3,898,528	-				-2.0
3,898,547	+				-0.4
3,898,547	+				-0.7
3,898,547	+				+1.1
3,898,548	-				+0.0
3,898,548	-				+0.2
3,898,548	-				+1.8
3,898,548	-				-0.4
3,898,561	+				+1.9
3,898,578	+				-1.5
3,898,579	-				-0.7
3,898,585	+				-1.1