Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3035

Experiment: Gentamicin 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.001 mg/ml
3,414,750	+		Pf1N1B4_3033	0.74	+0.1
3,414,819	+		Pf1N1B4_3033	0.78	+0.4
3,414,819	+		Pf1N1B4_3033	0.78	-0.2
3,414,819	+		Pf1N1B4_3033	0.78	-0.6
3,414,820	-		Pf1N1B4_3033	0.78	-0.3
3,414,820	-				-0.8
3,414,820	-		Pf1N1B4_3033	0.78	+0.4
3,414,820	-		Pf1N1B4_3033	0.78	+1.5
3,414,820	-		Pf1N1B4_3033	0.78	-1.5
3,415,606	-		Pf1N1B4_3034	0.81	+0.1
3,415,606	-		Pf1N1B4_3034	0.81	-0.5
3,415,659	+				+0.3
3,415,659	+				+1.4
3,415,660	-				-0.8
3,415,660	-				+0.8
3,415,660	-				-0.2
3,415,746	+				+0.8
3,415,747	-				+0.1
3,415,747	-				-1.5
3,415,840	+				+1.4
3,415,841	-		Pf1N1B4_3035	0.11	+0.8
3,415,841	-		Pf1N1B4_3035	0.11	-0.8
3,415,841	-		Pf1N1B4_3035	0.11	+1.1
3,415,984	-		Pf1N1B4_3035	0.22	+0.2
3,416,023	-		Pf1N1B4_3035	0.25	-1.8
3,416,038	+		Pf1N1B4_3035	0.26	-2.4
3,416,039	-		Pf1N1B4_3035	0.26	-0.1
3,416,146	+		Pf1N1B4_3035	0.34	-0.5
3,416,147	-		Pf1N1B4_3035	0.34	-0.5
3,416,147	-		Pf1N1B4_3035	0.34	-0.8
3,416,147	-		Pf1N1B4_3035	0.34	-2.4
3,416,219	-		Pf1N1B4_3035	0.40	+0.4
3,416,219	-		Pf1N1B4_3035	0.40	-2.4
3,416,219	-		Pf1N1B4_3035	0.40	+1.2
3,416,219	-		Pf1N1B4_3035	0.40	-0.6
3,416,305	+		Pf1N1B4_3035	0.47	-0.0
3,416,306	-		Pf1N1B4_3035	0.47	-1.8
3,416,306	-		Pf1N1B4_3035	0.47	+0.5
3,416,306	-		Pf1N1B4_3035	0.47	-0.7
3,416,306	-		Pf1N1B4_3035	0.47	+1.0
3,416,306	-		Pf1N1B4_3035	0.47	+0.8
3,416,306	-		Pf1N1B4_3035	0.47	+1.5
3,416,306	-		Pf1N1B4_3035	0.47	+0.2
3,416,338	+		Pf1N1B4_3035	0.49	-0.5
3,416,338	+		Pf1N1B4_3035	0.49	+0.8
3,416,338	+		Pf1N1B4_3035	0.49	-0.4
3,416,339	-		Pf1N1B4_3035	0.49	+0.1
3,416,339	-		Pf1N1B4_3035	0.49	-0.2
3,416,782	+		Pf1N1B4_3035	0.83	-1.2
3,416,782	+		Pf1N1B4_3035	0.83	-0.2
3,416,783	-		Pf1N1B4_3035	0.84	+0.3
3,416,783	-		Pf1N1B4_3035	0.84	+0.3
3,416,783	-		Pf1N1B4_3035	0.84	-0.8
3,416,783	-		Pf1N1B4_3035	0.84	-0.6
3,416,840	-		Pf1N1B4_3035	0.88	+0.7
3,416,854	+		Pf1N1B4_3035	0.89	-0.2
3,416,855	-		Pf1N1B4_3035	0.89	-1.0
3,416,855	-		Pf1N1B4_3035	0.89	+0.4
3,416,939	+				-1.5
3,416,940	-				-2.5
3,416,940	-				-1.0
3,416,985	+				-0.5
3,417,130	-		Pf1N1B4_3036	0.20	-0.8
3,417,130	-		Pf1N1B4_3036	0.20	-0.8
3,417,130	-		Pf1N1B4_3036	0.20	-1.2
3,417,130	-		Pf1N1B4_3036	0.20	-1.2
3,417,582	+		Pf1N1B4_3036	0.86	+0.2
3,417,582	+		Pf1N1B4_3036	0.86	+0.6
3,417,583	-		Pf1N1B4_3036	0.87	+0.8
3,417,583	-		Pf1N1B4_3036	0.87	+0.8
3,417,893	+				-0.3
3,417,893	+				-0.0
3,417,894	-				-0.3
3,417,923	+		Pf1N1B4_3037	0.11	+0.8
3,417,923	+		Pf1N1B4_3037	0.11	+0.4
3,417,924	-		Pf1N1B4_3037	0.11	-1.3