Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3029

Experiment: Gentamicin 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.001 mg/ml
3,405,792	+				+0.8
3,405,793	-		Pf1N1B4_3028	0.22	-2.2
3,406,038	+		Pf1N1B4_3028	0.43	-1.4
3,406,039	-		Pf1N1B4_3028	0.43	-1.2
3,406,039	-		Pf1N1B4_3028	0.43	-0.7
3,406,059	+		Pf1N1B4_3028	0.45	+0.2
3,406,101	+		Pf1N1B4_3028	0.48	-1.5
3,406,101	+		Pf1N1B4_3028	0.48	+0.8
3,406,101	+		Pf1N1B4_3028	0.48	-0.0
3,406,122	+		Pf1N1B4_3028	0.50	+1.3
3,406,122	+		Pf1N1B4_3028	0.50	-0.0
3,406,122	+		Pf1N1B4_3028	0.50	-0.8
3,406,122	+		Pf1N1B4_3028	0.50	+0.2
3,406,123	-		Pf1N1B4_3028	0.50	+0.1
3,406,123	-		Pf1N1B4_3028	0.50	-1.1
3,406,123	-		Pf1N1B4_3028	0.50	-0.4
3,406,137	+		Pf1N1B4_3028	0.51	+0.1
3,406,138	-		Pf1N1B4_3028	0.51	-0.5
3,406,138	-		Pf1N1B4_3028	0.51	-1.5
3,406,138	-		Pf1N1B4_3028	0.51	-2.0
3,406,210	+				+2.8
3,406,210	+		Pf1N1B4_3028	0.58	+0.3
3,406,211	-				+0.2
3,406,211	-		Pf1N1B4_3028	0.58	+0.5
3,406,239	+		Pf1N1B4_3028	0.60	+2.6
3,406,240	-		Pf1N1B4_3028	0.60	-1.5
3,406,240	-		Pf1N1B4_3028	0.60	+0.1
3,406,240	-				-1.2
3,406,240	-				-0.2
3,406,240	-		Pf1N1B4_3028	0.60	+2.6
3,406,240	-		Pf1N1B4_3028	0.60	-0.2
3,406,240	-		Pf1N1B4_3028	0.60	-0.1
3,406,240	-				-0.8
3,406,240	-		Pf1N1B4_3028	0.60	-0.3
3,406,279	-		Pf1N1B4_3028	0.64	-2.4
3,406,297	+				+1.8
3,406,297	+		Pf1N1B4_3028	0.65	-0.0
3,406,297	+		Pf1N1B4_3028	0.65	-1.7
3,406,297	+		Pf1N1B4_3028	0.65	+0.8
3,406,297	+		Pf1N1B4_3028	0.65	+1.1
3,406,297	+		Pf1N1B4_3028	0.65	-0.5
3,406,297	+		Pf1N1B4_3028	0.65	-1.4
3,406,297	+		Pf1N1B4_3028	0.65	+1.0
3,406,297	+				-0.8
3,406,298	-		Pf1N1B4_3028	0.65	+0.8
3,406,299	+		Pf1N1B4_3028	0.65	+0.1
3,406,299	+		Pf1N1B4_3028	0.65	+0.5
3,406,299	+		Pf1N1B4_3028	0.65	+1.4
3,406,299	+				-0.2
3,406,299	+		Pf1N1B4_3028	0.65	+1.8
3,406,299	+		Pf1N1B4_3028	0.65	-0.2
3,406,299	+		Pf1N1B4_3028	0.65	-0.1
3,406,299	+		Pf1N1B4_3028	0.65	+0.1
3,406,299	+		Pf1N1B4_3028	0.65	+0.8
3,406,300	-				-0.2
3,406,300	-		Pf1N1B4_3028	0.66	-1.2
3,406,300	-		Pf1N1B4_3028	0.66	+0.2
3,406,300	-		Pf1N1B4_3028	0.66	-0.5
3,406,300	-		Pf1N1B4_3028	0.66	-1.5
3,406,300	-		Pf1N1B4_3028	0.66	+1.1
3,406,300	-		Pf1N1B4_3028	0.66	+0.1
3,406,358	-		Pf1N1B4_3028	0.71	-1.0
3,406,358	-		Pf1N1B4_3028	0.71	+0.1
3,406,560	+		Pf1N1B4_3028	0.88	-0.4
3,406,561	-				+2.2
3,406,714	-				+0.4
3,406,714	-				-0.2
3,406,714	-				-2.9
3,406,714	-				-0.9
3,406,718	+				+1.1
3,406,718	+				-0.5
3,406,719	-				-0.8
3,406,773	-				-2.0
3,406,788	+				+0.1
3,406,789	-				+0.8
3,406,789	-				-0.3
3,406,789	-				+0.1
3,406,789	-				-1.5
3,406,790	+				-1.0
3,406,790	+				+0.2
3,406,790	+				-0.4
3,406,790	+				-0.2
3,406,791	-				-1.8
3,406,791	-				-0.6
3,406,791	-				-2.2
3,406,791	-				+0.8
3,406,833	+				+0.1
3,406,833	+				-0.2
3,406,833	+				-0.5
3,406,833	+				-1.2
3,406,834	-				-0.8
3,406,834	-				-0.1
3,406,856	+				-0.8
3,406,857	-				+0.8
3,407,145	+		Pf1N1B4_3029	0.25	-1.0
3,407,145	+				-0.8
3,407,146	-		Pf1N1B4_3029	0.25	-0.0
3,407,148	+		Pf1N1B4_3029	0.25	-0.9
3,407,148	+		Pf1N1B4_3029	0.25	+0.2
3,407,148	+		Pf1N1B4_3029	0.25	+0.5
3,407,148	+		Pf1N1B4_3029	0.25	-0.4
3,407,148	+		Pf1N1B4_3029	0.25	-1.2
3,407,148	+		Pf1N1B4_3029	0.25	+0.4
3,407,149	-		Pf1N1B4_3029	0.25	+0.8
3,407,149	-		Pf1N1B4_3029	0.25	+0.2
3,407,364	+				+0.8
3,407,364	+		Pf1N1B4_3029	0.40	+0.4
3,407,364	+		Pf1N1B4_3029	0.40	-2.4
3,407,365	-		Pf1N1B4_3029	0.40	+1.5
3,407,365	-		Pf1N1B4_3029	0.40	-0.8
3,407,365	-		Pf1N1B4_3029	0.40	-0.5
3,407,403	+		Pf1N1B4_3029	0.42	+0.1
3,407,403	+		Pf1N1B4_3029	0.42	+1.8
3,407,403	+		Pf1N1B4_3029	0.42	+0.8
3,407,403	+		Pf1N1B4_3029	0.42	+1.2
3,407,403	+		Pf1N1B4_3029	0.42	+0.4
3,407,404	-		Pf1N1B4_3029	0.42	-0.5
3,407,404	-		Pf1N1B4_3029	0.42	+0.2
3,407,404	-		Pf1N1B4_3029	0.42	-0.6
3,407,404	-		Pf1N1B4_3029	0.42	-0.5
3,407,404	-		Pf1N1B4_3029	0.42	+1.4
3,407,406	+		Pf1N1B4_3029	0.42	+1.0
3,407,407	-		Pf1N1B4_3029	0.43	-0.8
3,407,412	+		Pf1N1B4_3029	0.43	+2.2
3,407,413	-		Pf1N1B4_3029	0.43	-0.6
3,407,413	-		Pf1N1B4_3029	0.43	-0.7
3,407,413	-		Pf1N1B4_3029	0.43	-1.7
3,407,413	-		Pf1N1B4_3029	0.43	+0.1
3,407,413	-		Pf1N1B4_3029	0.43	-0.6
3,407,591	+		Pf1N1B4_3029	0.55	+0.3
3,407,591	+		Pf1N1B4_3029	0.55	-0.2
3,407,592	-		Pf1N1B4_3029	0.55	-0.2
3,407,592	-		Pf1N1B4_3029	0.55	-2.2
3,407,626	+		Pf1N1B4_3029	0.58	+1.4
3,407,626	+		Pf1N1B4_3029	0.58	+0.2
3,407,626	+		Pf1N1B4_3029	0.58	+0.7
3,407,626	+		Pf1N1B4_3029	0.58	-1.0
3,407,626	+		Pf1N1B4_3029	0.58	+0.0
3,407,627	-		Pf1N1B4_3029	0.58	+2.3
3,407,627	-		Pf1N1B4_3029	0.58	+1.8
3,407,627	-		Pf1N1B4_3029	0.58	-1.7
3,407,627	-		Pf1N1B4_3029	0.58	+1.1
3,407,775	+		Pf1N1B4_3029	0.68	-1.2
3,407,836	-		Pf1N1B4_3029	0.72	-0.6
3,407,847	+		Pf1N1B4_3029	0.73	+0.2
3,407,847	+		Pf1N1B4_3029	0.73	+1.4
3,407,847	+				-0.8
3,407,847	+		Pf1N1B4_3029	0.73	+0.5
3,407,848	-		Pf1N1B4_3029	0.73	+1.4
3,407,848	-		Pf1N1B4_3029	0.73	-0.4
3,408,305	+				+0.8
3,408,306	-				-1.2
3,408,306	-				-0.0
3,408,306	-				-0.2
3,408,306	-				-0.6
3,408,307	+				-0.9
3,408,307	+				+1.2
3,408,307	+				+0.1
3,408,307	+				+0.6
3,408,307	+				-0.0
3,408,307	+				-0.8
3,408,307	+				-2.4
3,408,307	+				+0.5
3,408,307	+				-1.4
3,408,307	+				+0.4
3,408,307	+				-1.0
3,408,307	+				+0.3
3,408,307	+				-1.5
3,408,308	-				+0.8
3,408,308	-				+0.8
3,408,308	-				+0.2
3,408,308	-				-0.5
3,408,308	-				+1.0
3,408,322	+				+1.8
3,408,348	+				-1.1
3,408,348	+				-0.5
3,408,349	-				+1.0
3,408,349	-				+0.5
3,408,349	-				+0.4
3,408,351	+				+0.8
3,408,351	+				-2.2
3,408,352	-				+0.2
3,408,352	-				-0.5
3,408,352	-				+0.4
3,408,355	+				-0.2
3,408,355	+				-0.4
3,408,356	-				-1.1
3,408,356	-				+0.8
3,408,356	-				+1.1
3,408,356	-				-0.8
3,408,376	-				+0.1
3,408,376	-				+0.2
3,408,379	+				-3.1
3,408,379	+				-0.5
3,408,379	+				+1.1
3,408,379	+				-1.5
3,408,380	-				-0.6
3,408,380	-				+1.5
3,408,380	-				-0.6
3,408,380	-				+1.0
3,408,380	-				-1.0
3,408,380	-				-0.4
3,408,380	-				-0.2
3,408,549	+		Pf1N1B4_3030	0.19	+0.7
3,408,549	+		Pf1N1B4_3030	0.19	-2.4
3,408,550	-		Pf1N1B4_3030	0.19	-0.5
3,408,894	+		Pf1N1B4_3030	0.57	-0.8
3,408,894	+		Pf1N1B4_3030	0.57	+0.4
3,408,894	+		Pf1N1B4_3030	0.57	+0.4
3,408,895	-		Pf1N1B4_3030	0.57	-0.4
3,408,921	-		Pf1N1B4_3030	0.60	-0.2
3,408,936	+		Pf1N1B4_3030	0.61	-0.2
3,408,972	+		Pf1N1B4_3030	0.65	+0.1
3,408,972	+		Pf1N1B4_3030	0.65	+0.3
3,408,973	-		Pf1N1B4_3030	0.65	-0.1
3,408,973	-		Pf1N1B4_3030	0.65	+1.2
3,408,973	-		Pf1N1B4_3030	0.65	-0.2
3,408,973	-		Pf1N1B4_3030	0.65	-0.5
3,408,973	-		Pf1N1B4_3030	0.65	-0.4