Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3024

Experiment: Gentamicin 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.001 mg/ml
3,400,152	+				+1.5
3,400,152	+				-0.7
3,400,152	+				+0.5
3,400,177	+				-0.6
3,400,177	+				+0.2
3,400,178	-				+1.8
3,400,178	-				+0.9
3,400,222	+				+0.4
3,400,223	+				+1.2
3,400,223	+				+0.8
3,400,223	+				-1.8
3,400,223	+				-1.7
3,400,223	+				-1.1
3,400,223	+				-1.2
3,400,223	+				-1.9
3,400,223	+				+0.2
3,400,223	+				-0.9
3,400,223	+				+1.2
3,400,223	+				+1.3
3,400,223	+				+0.2
3,400,224	-				-0.8
3,400,224	-				-2.0
3,400,224	-				-0.8
3,400,224	-				-0.8
3,400,224	-				-0.2
3,400,224	-				-0.8
3,400,224	-				-1.2
3,400,224	-				+0.9
3,400,224	-				-1.8
3,400,224	-				+0.7
3,400,227	+				+0.6
3,400,227	+				-0.0
3,400,227	+				+0.2
3,400,227	+				-2.5
3,400,227	+				+1.0
3,400,227	+				+0.0
3,400,228	-				+0.5
3,400,228	-				+0.8
3,400,228	-				-0.2
3,400,320	+				-1.2
3,400,320	+				+0.0
3,400,320	+				+0.8
3,400,320	+				+1.5
3,400,321	-				-1.4
3,400,321	-				+0.1
3,400,321	-				-1.2
3,400,335	+				-0.7
3,400,336	-				+1.4
3,400,336	-				+0.4
3,400,336	-				-0.8
3,400,336	-				-1.2
3,400,341	+				-1.5
3,400,341	+				-0.8
3,400,342	-				+0.1
3,400,342	-				-1.2
3,400,342	-				-1.3
3,400,442	+				+0.6
3,400,443	-				+0.1
3,400,451	+				+0.4
3,400,451	+				-0.9
3,400,451	+				-0.3
3,400,451	+				+0.5
3,400,452	-				-0.1
3,400,468	+				+1.8
3,400,472	+				+0.5
3,400,472	+				+0.2
3,400,472	+				+1.4
3,400,509	+				+0.6
3,400,510	-				-0.2
3,400,510	-				-1.2
3,400,510	-				+0.8
3,400,510	-				+1.2
3,400,514	+				-1.7
3,400,584	+				+0.4
3,400,617	+				+0.8
3,400,617	+				-0.0
3,400,617	+				-0.8
3,400,617	+				-1.2
3,400,617	+				-2.0
3,400,617	+				-0.5
3,400,617	+				+0.4
3,400,617	+				-0.6
3,400,617	+				-1.5
3,400,617	+				+0.4
3,400,618	-				-0.2
3,400,618	-				+0.1
3,400,618	-				-1.2
3,400,618	-				+0.4
3,400,618	-				-0.7
3,400,618	-				+0.1
3,400,619	+				-1.4
3,400,619	+				+0.3
3,400,619	+				-0.2
3,400,619	+				+0.8
3,400,619	+				-0.8
3,400,619	+				+0.3
3,400,619	+				-0.2
3,400,619	+				+0.4
3,400,619	+				-0.9
3,400,619	+				+0.5
3,400,619	+				-0.1
3,400,619	+				-1.5
3,400,619	+				-2.9
3,400,619	+				-0.1
3,400,619	+				+0.4
3,400,620	-				+1.1
3,400,620	-				+0.2
3,400,620	-				-1.2
3,400,645	+				+0.8
3,400,645	+				-0.6
3,400,645	+				+0.1
3,400,645	+				-0.6
3,400,646	-				-0.8
3,400,646	-				+0.5
3,400,666	+		Pf1N1B4_3023	0.17	-2.0
3,400,667	-		Pf1N1B4_3023	0.17	+0.5
3,400,667	-		Pf1N1B4_3023	0.17	-2.8
3,400,667	-		Pf1N1B4_3023	0.17	+0.4
3,400,832	+				-1.0
3,400,955	+				+1.8
3,400,955	+				+1.3
3,400,955	+				+1.6
3,400,956	-				+0.0
3,400,956	-				+1.2
3,400,956	-				+0.0
3,400,988	+				-3.3
3,400,988	+				+0.8
3,400,988	+				-0.8
3,400,989	-				-1.0
3,400,989	-				-1.8
3,401,003	+				+0.4
3,401,003	+				-1.1
3,401,003	+				-0.3
3,401,004	-				+1.4
3,401,168	+		Pf1N1B4_3024	0.15	-0.0
3,401,169	-		Pf1N1B4_3024	0.15	-2.2
3,401,453	+		Pf1N1B4_3024	0.35	+0.2
3,401,454	-		Pf1N1B4_3024	0.35	-0.3
3,401,461	-		Pf1N1B4_3024	0.36	+0.0
3,401,501	+		Pf1N1B4_3024	0.38	-0.5
3,401,501	+		Pf1N1B4_3024	0.38	+0.5
3,401,502	-		Pf1N1B4_3024	0.38	-1.2
3,401,502	-		Pf1N1B4_3024	0.38	-0.5
3,401,502	-				-2.0
3,401,502	-		Pf1N1B4_3024	0.38	+0.8
3,401,502	-		Pf1N1B4_3024	0.38	+0.4
3,401,502	-		Pf1N1B4_3024	0.38	+0.8
3,401,519	+				-0.8
3,401,520	-		Pf1N1B4_3024	0.40	-0.6
3,401,520	-		Pf1N1B4_3024	0.40	-1.8
3,401,558	+		Pf1N1B4_3024	0.42	-0.4
3,401,558	+		Pf1N1B4_3024	0.42	-0.2
3,401,558	+		Pf1N1B4_3024	0.42	+1.0
3,401,559	-		Pf1N1B4_3024	0.42	+1.0
3,401,559	-		Pf1N1B4_3024	0.42	+0.1
3,401,559	-		Pf1N1B4_3024	0.42	+0.8
3,401,577	+		Pf1N1B4_3024	0.44	-0.0
3,401,577	+		Pf1N1B4_3024	0.44	+1.8
3,401,577	+		Pf1N1B4_3024	0.44	+0.5
3,401,578	-		Pf1N1B4_3024	0.44	-1.4
3,401,578	-		Pf1N1B4_3024	0.44	-0.8
3,401,584	+		Pf1N1B4_3024	0.44	-0.0
3,401,585	-		Pf1N1B4_3024	0.44	+1.3
3,401,728	+		Pf1N1B4_3024	0.54	+0.2
3,401,729	-		Pf1N1B4_3024	0.54	-0.8
3,401,778	-		Pf1N1B4_3024	0.58	-0.3
3,401,787	+		Pf1N1B4_3024	0.58	+0.1
3,401,787	+				+1.2
3,401,787	+		Pf1N1B4_3024	0.58	+0.8
3,401,787	+		Pf1N1B4_3024	0.58	+0.6
3,401,787	+		Pf1N1B4_3024	0.58	-0.8
3,401,788	-		Pf1N1B4_3024	0.59	-0.5
3,401,788	-		Pf1N1B4_3024	0.59	-1.3
3,401,788	-		Pf1N1B4_3024	0.59	+0.2
3,401,788	-		Pf1N1B4_3024	0.59	+0.2
3,401,791	+		Pf1N1B4_3024	0.59	+0.8
3,401,791	+		Pf1N1B4_3024	0.59	-0.4
3,401,791	+		Pf1N1B4_3024	0.59	-0.9
3,401,791	+		Pf1N1B4_3024	0.59	-0.3
3,401,791	+		Pf1N1B4_3024	0.59	+2.4
3,401,792	-		Pf1N1B4_3024	0.59	+1.2
3,401,792	-		Pf1N1B4_3024	0.59	+0.4
3,401,792	-		Pf1N1B4_3024	0.59	+1.2
3,401,792	-		Pf1N1B4_3024	0.59	-1.2
3,401,877	+		Pf1N1B4_3024	0.65	+2.4
3,401,877	+		Pf1N1B4_3024	0.65	+0.3
3,401,877	+		Pf1N1B4_3024	0.65	-3.8
3,401,878	-		Pf1N1B4_3024	0.65	+0.2
3,401,880	+		Pf1N1B4_3024	0.65	+0.0
3,401,930	+		Pf1N1B4_3024	0.68	-0.5
3,402,002	+		Pf1N1B4_3024	0.74	-0.7
3,402,002	+		Pf1N1B4_3024	0.74	-0.0
3,402,003	-		Pf1N1B4_3024	0.74	+1.1
3,402,003	-		Pf1N1B4_3024	0.74	-1.4
3,402,101	+		Pf1N1B4_3024	0.80	-0.2
3,402,101	+				+0.2
3,402,102	-		Pf1N1B4_3024	0.81	+0.2
3,402,287	-				-1.1
3,402,382	+				-1.0
3,402,382	+				-0.8
3,402,382	+				-0.1
3,402,382	+				-0.5
3,402,382	+				-0.4
3,402,382	+				-0.5
3,402,383	-				+0.3
3,402,383	-				+1.1
3,402,383	-				+0.8
3,402,383	-				+0.2
3,402,383	-				+1.8
3,402,383	-				+1.5
3,402,403	+				-2.8
3,402,403	+				+1.8
3,402,403	+				+0.1
3,402,403	+				-0.2
3,402,403	+				-2.2
3,402,403	+				-0.2
3,402,403	+				+1.8
3,402,403	+				-0.4
3,402,403	+				-0.7
3,402,403	+				-0.2
3,402,403	+				-0.8
3,402,403	+				+0.1
3,402,403	+				-0.8
3,402,403	+				-1.0
3,402,403	+				+1.8
3,402,403	+				+0.8
3,402,403	+				+0.5
3,402,404	-				-1.5
3,402,404	-				-0.8
3,402,404	-				-0.8
3,402,404	-				+0.1
3,402,404	-				-1.5
3,402,404	-				+0.1
3,402,404	-				-0.3
3,402,404	-				-0.4
3,402,404	-				-0.0
3,402,404	-				+0.7
3,402,404	-				-2.0
3,402,404	-				-0.8
3,402,404	-				-0.8
3,402,404	-				+1.4
3,402,404	-				-0.4
3,402,486	+				+0.7
3,402,486	+				+0.2
3,402,487	-				+1.4
3,402,487	-				-0.2
3,402,487	-				-2.0
3,402,487	-				-2.4
3,402,555	+				+0.5
3,402,600	+				-1.4
3,402,600	+				-0.4
3,402,600	+				+0.1
3,402,603	+				-0.2
3,402,603	+				-0.4
3,402,603	+				+0.8
3,402,603	+				-0.2
3,402,604	-				+0.8
3,402,825	+		Pf1N1B4_3025	0.33	+1.6
3,402,825	+		Pf1N1B4_3025	0.33	-0.9
3,402,882	+		Pf1N1B4_3025	0.40	-1.9
3,402,883	-		Pf1N1B4_3025	0.40	+0.6
3,402,883	-		Pf1N1B4_3025	0.40	+0.2
3,402,883	-		Pf1N1B4_3025	0.40	-1.0
3,402,883	-				+0.8
3,402,883	-		Pf1N1B4_3025	0.40	-2.5
3,402,883	-		Pf1N1B4_3025	0.40	-0.2
3,402,918	+		Pf1N1B4_3025	0.44	+0.4
3,402,918	+		Pf1N1B4_3025	0.44	+0.1
3,402,919	-		Pf1N1B4_3025	0.44	-1.2
3,403,335	-				+1.8
3,403,366	+				-0.0
3,403,366	+				+0.2
3,403,366	+				+1.4
3,403,367	-				+0.8
3,403,367	-				-2.0
3,403,367	-				+0.8