Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2014

Experiment: Gentamicin 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.001 mg/ml
2,299,851	+				-0.3
2,299,989	+		Pf1N1B4_2013	0.34	+3.6
2,299,989	+		Pf1N1B4_2013	0.34	+0.5
2,300,070	+		Pf1N1B4_2013	0.44	+1.5
2,300,079	+		Pf1N1B4_2013	0.45	+1.0
2,300,079	+		Pf1N1B4_2013	0.45	-0.3
2,300,079	+		Pf1N1B4_2013	0.45	+0.9
2,300,079	+		Pf1N1B4_2013	0.45	+0.3
2,300,079	+		Pf1N1B4_2013	0.45	-0.4
2,300,080	-		Pf1N1B4_2013	0.45	-1.0
2,300,080	-		Pf1N1B4_2013	0.45	+0.1
2,300,137	+		Pf1N1B4_2013	0.52	+0.9
2,300,137	+		Pf1N1B4_2013	0.52	+0.1
2,300,137	+		Pf1N1B4_2013	0.52	-0.2
2,300,137	+		Pf1N1B4_2013	0.52	+0.8
2,300,137	+				+0.3
2,300,137	+		Pf1N1B4_2013	0.52	+0.4
2,300,138	-		Pf1N1B4_2013	0.52	-1.2
2,300,138	-		Pf1N1B4_2013	0.52	-0.7
2,300,138	-		Pf1N1B4_2013	0.52	+1.3
2,300,138	-		Pf1N1B4_2013	0.52	+0.4
2,300,181	+		Pf1N1B4_2013	0.57	+1.0
2,300,181	+		Pf1N1B4_2013	0.57	+1.3
2,300,181	+		Pf1N1B4_2013	0.57	-0.4
2,300,181	+		Pf1N1B4_2013	0.57	-2.3
2,300,182	-		Pf1N1B4_2013	0.58	-1.3
2,300,182	-		Pf1N1B4_2013	0.58	+0.9
2,300,184	+		Pf1N1B4_2013	0.58	-1.5
2,300,184	+		Pf1N1B4_2013	0.58	+0.9
2,300,184	+		Pf1N1B4_2013	0.58	+0.7
2,300,184	+		Pf1N1B4_2013	0.58	-0.3
2,300,185	-		Pf1N1B4_2013	0.58	+1.3
2,300,185	-		Pf1N1B4_2013	0.58	+0.5
2,300,351	+		Pf1N1B4_2013	0.78	-2.2
2,300,404	-		Pf1N1B4_2013	0.85	-0.4
2,300,580	-				-1.4
2,300,587	+				-1.5
2,300,587	+				-0.4
2,300,587	+				-0.1
2,300,588	-				-0.0
2,300,589	+				-0.1
2,300,590	-				-0.8
2,300,590	-				+1.3
2,300,783	+		Pf1N1B4_2014	0.16	-1.7
2,300,783	+		Pf1N1B4_2014	0.16	+0.6
2,300,783	+		Pf1N1B4_2014	0.16	-0.3
2,300,784	-		Pf1N1B4_2014	0.16	-0.1
2,300,784	-		Pf1N1B4_2014	0.16	-1.5
2,300,784	-		Pf1N1B4_2014	0.16	-0.0
2,300,785	+		Pf1N1B4_2014	0.16	-0.7
2,300,785	+		Pf1N1B4_2014	0.16	-1.3
2,300,786	-		Pf1N1B4_2014	0.16	-0.7
2,300,822	+		Pf1N1B4_2014	0.20	-0.5
2,300,843	-		Pf1N1B4_2014	0.22	-1.3
2,300,843	-		Pf1N1B4_2014	0.22	-0.1
2,301,434	+		Pf1N1B4_2014	0.88	-0.7
2,301,511	+				+0.7
2,301,511	+				-0.2
2,301,511	+				+1.3
2,301,512	-				+1.3
2,301,512	-				-0.7
2,301,512	-				+2.8
2,301,579	+				-0.7
2,301,579	+				-0.0
2,301,579	+				+2.9
2,301,579	+				-0.3
2,301,579	+				+0.9
2,301,580	-				-1.5
2,301,601	+				+0.4
2,301,601	+				-0.5
2,301,602	-				-0.8
2,301,602	-				+1.0
2,301,602	-				+0.9
2,301,632	-				+0.1
2,301,632	-				-0.3
2,301,840	+		Pf1N1B4_2015	0.30	-2.0
2,301,840	+		Pf1N1B4_2015	0.30	-1.9
2,301,841	-		Pf1N1B4_2015	0.30	-1.0
2,301,841	-		Pf1N1B4_2015	0.30	+0.2
2,301,921	+		Pf1N1B4_2015	0.42	+0.6
2,302,071	+		Pf1N1B4_2015	0.64	-0.3
2,302,071	+		Pf1N1B4_2015	0.64	+0.0
2,302,072	-		Pf1N1B4_2015	0.64	+0.2
2,302,072	-		Pf1N1B4_2015	0.64	+0.6
2,302,149	+		Pf1N1B4_2015	0.76	+1.0
2,302,149	+		Pf1N1B4_2015	0.76	+0.1
2,302,150	-		Pf1N1B4_2015	0.76	-1.3
2,302,328	+				+1.3
2,302,329	-				-1.3
2,302,329	-				+0.8
2,302,329	-				+0.9
2,302,329	-				+0.7
2,302,329	-				-1.7
2,302,329	-				-0.4
2,302,329	-				-0.6
2,302,329	-				-0.4
2,302,330	+				+0.6
2,302,330	+				+2.3
2,302,330	+				+2.3
2,302,330	+				+1.1
2,302,331	-				+1.7
2,302,331	-				+1.2
2,302,331	-				+0.3
2,302,331	-				-0.6
2,302,331	-				-0.9
2,302,331	-				+0.1
2,302,331	-				-0.0
2,302,331	-				-1.5
2,302,331	-				-1.7
2,302,379	+		Pf1N1B4_2016	0.12	-1.9
2,302,380	-		Pf1N1B4_2016	0.12	-0.5
2,302,380	-		Pf1N1B4_2016	0.12	+0.8
2,302,380	-		Pf1N1B4_2016	0.12	-0.7
2,302,458	-		Pf1N1B4_2016	0.29	-0.4
2,302,458	-		Pf1N1B4_2016	0.29	+0.1
2,302,529	+		Pf1N1B4_2016	0.45	-1.3
2,302,530	-		Pf1N1B4_2016	0.45	+0.9
2,302,530	-		Pf1N1B4_2016	0.45	-0.8
2,302,530	-		Pf1N1B4_2016	0.45	-0.5