Experiment: Gentamicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1205 and Pf1N1B4_1206 overlap by 36 nucleotides Pf1N1B4_1206 and Pf1N1B4_1207 are separated by 13 nucleotides Pf1N1B4_1207 and Pf1N1B4_1208 are separated by 72 nucleotides
Pf1N1B4_1205 - Sulfate permease, at 1,369,035 to 1,370,420
_1205
Pf1N1B4_1206 - hypothetical protein, at 1,370,385 to 1,370,672
_1206
Pf1N1B4_1207 - Transcriptional regulator, LysR family, at 1,370,686 to 1,371,597
_1207
Pf1N1B4_1208 - Modulator of drug activity B, at 1,371,670 to 1,372,260
_1208
Position (kb) 1370
1371 Strain fitness (log2 ratio) -2
-1
0
1 at 1369.406 kb on + strand, within Pf1N1B4_1205 at 1369.580 kb on + strand, within Pf1N1B4_1205 at 1369.581 kb on - strand, within Pf1N1B4_1205 at 1369.581 kb on - strand, within Pf1N1B4_1205 at 1369.814 kb on - strand, within Pf1N1B4_1205 at 1369.814 kb on - strand, within Pf1N1B4_1205 at 1370.047 kb on + strand, within Pf1N1B4_1205 at 1370.047 kb on + strand, within Pf1N1B4_1205 at 1370.047 kb on + strand, within Pf1N1B4_1205 at 1370.047 kb on + strand, within Pf1N1B4_1205 at 1370.047 kb on + strand, within Pf1N1B4_1205 at 1370.047 kb on + strand, within Pf1N1B4_1205 at 1370.048 kb on - strand, within Pf1N1B4_1205 at 1370.048 kb on - strand at 1370.239 kb on + strand, within Pf1N1B4_1205 at 1370.239 kb on + strand, within Pf1N1B4_1205 at 1370.239 kb on + strand, within Pf1N1B4_1205 at 1370.239 kb on + strand, within Pf1N1B4_1205 at 1370.240 kb on - strand, within Pf1N1B4_1205 at 1370.240 kb on - strand, within Pf1N1B4_1205 at 1370.240 kb on - strand, within Pf1N1B4_1205 at 1370.240 kb on - strand, within Pf1N1B4_1205 at 1370.362 kb on + strand at 1370.362 kb on + strand at 1370.363 kb on - strand at 1370.486 kb on - strand, within Pf1N1B4_1206 at 1370.490 kb on - strand, within Pf1N1B4_1206 at 1370.712 kb on - strand at 1370.784 kb on - strand, within Pf1N1B4_1207 at 1370.784 kb on - strand, within Pf1N1B4_1207 at 1370.784 kb on - strand, within Pf1N1B4_1207 at 1370.981 kb on + strand, within Pf1N1B4_1207 at 1370.981 kb on + strand, within Pf1N1B4_1207 at 1370.982 kb on - strand at 1371.083 kb on + strand, within Pf1N1B4_1207 at 1371.084 kb on - strand, within Pf1N1B4_1207 at 1371.266 kb on + strand, within Pf1N1B4_1207 at 1371.266 kb on + strand, within Pf1N1B4_1207 at 1371.267 kb on - strand, within Pf1N1B4_1207 at 1371.404 kb on + strand, within Pf1N1B4_1207 at 1371.404 kb on + strand, within Pf1N1B4_1207 at 1371.404 kb on + strand, within Pf1N1B4_1207 at 1371.405 kb on - strand, within Pf1N1B4_1207 at 1371.405 kb on - strand, within Pf1N1B4_1207 at 1371.405 kb on - strand, within Pf1N1B4_1207 at 1371.655 kb on + strand at 1371.655 kb on + strand at 1371.655 kb on + strand at 1371.655 kb on + strand at 1371.659 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.001 mg/ml remove 1,369,406 + Pf1N1B4_1205 0.27 -2.2 1,369,580 + Pf1N1B4_1205 0.39 -1.0 1,369,581 - Pf1N1B4_1205 0.39 -1.0 1,369,581 - Pf1N1B4_1205 0.39 -0.1 1,369,814 - Pf1N1B4_1205 0.56 -1.0 1,369,814 - Pf1N1B4_1205 0.56 -1.2 1,370,047 + Pf1N1B4_1205 0.73 -1.6 1,370,047 + Pf1N1B4_1205 0.73 +1.6 1,370,047 + Pf1N1B4_1205 0.73 -0.3 1,370,047 + Pf1N1B4_1205 0.73 -2.0 1,370,047 + Pf1N1B4_1205 0.73 -1.4 1,370,047 + Pf1N1B4_1205 0.73 -1.3 1,370,048 - Pf1N1B4_1205 0.73 -0.9 1,370,048 - -1.0 1,370,239 + Pf1N1B4_1205 0.87 -0.0 1,370,239 + Pf1N1B4_1205 0.87 +1.4 1,370,239 + Pf1N1B4_1205 0.87 -2.4 1,370,239 + Pf1N1B4_1205 0.87 +0.4 1,370,240 - Pf1N1B4_1205 0.87 -0.6 1,370,240 - Pf1N1B4_1205 0.87 -1.4 1,370,240 - Pf1N1B4_1205 0.87 -0.0 1,370,240 - Pf1N1B4_1205 0.87 -0.9 1,370,362 + -1.8 1,370,362 + -0.8 1,370,363 - -0.4 1,370,486 - Pf1N1B4_1206 0.35 +1.0 1,370,490 - Pf1N1B4_1206 0.36 +1.5 1,370,712 - -1.4 1,370,784 - Pf1N1B4_1207 0.11 -0.2 1,370,784 - Pf1N1B4_1207 0.11 +0.2 1,370,784 - Pf1N1B4_1207 0.11 +0.5 1,370,981 + Pf1N1B4_1207 0.32 -0.4 1,370,981 + Pf1N1B4_1207 0.32 -0.0 1,370,982 - +0.4 1,371,083 + Pf1N1B4_1207 0.44 +1.3 1,371,084 - Pf1N1B4_1207 0.44 -0.3 1,371,266 + Pf1N1B4_1207 0.64 +1.3 1,371,266 + Pf1N1B4_1207 0.64 -1.2 1,371,267 - Pf1N1B4_1207 0.64 +0.7 1,371,404 + Pf1N1B4_1207 0.79 -0.8 1,371,404 + Pf1N1B4_1207 0.79 +0.7 1,371,404 + Pf1N1B4_1207 0.79 -2.5 1,371,405 - Pf1N1B4_1207 0.79 +1.6 1,371,405 - Pf1N1B4_1207 0.79 -0.3 1,371,405 - Pf1N1B4_1207 0.79 +1.5 1,371,655 + -1.0 1,371,655 + +1.0 1,371,655 + +0.1 1,371,655 + +0.6 1,371,659 - +0.4
Or see this region's nucleotide sequence