Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19920 and HSERO_RS19925 are separated by 19 nucleotides HSERO_RS19925 and HSERO_RS19930 are separated by 100 nucleotides HSERO_RS19930 and HSERO_RS19935 are separated by 52 nucleotides
HSERO_RS19920: HSERO_RS19920 - protocatechuate 3,4-dioxygenase subunit beta, at 4,572,141 to 4,572,833
_RS19920
HSERO_RS19925: HSERO_RS19925 - protocatechuate 3,4-dioxygenase, at 4,572,853 to 4,573,365
_RS19925
HSERO_RS19930: HSERO_RS19930 - 3-carboxy-cis,cis-muconate cycloisomerase, at 4,573,466 to 4,574,833
_RS19930
HSERO_RS19935: HSERO_RS19935 - hydrolase, at 4,574,886 to 4,576,148
_RS19935
Position (kb) 4573
4574
4575 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4572.614 kb on + strand, within HSERO_RS19920 at 4572.653 kb on - strand, within HSERO_RS19920 at 4572.680 kb on - strand, within HSERO_RS19920 at 4572.861 kb on + strand at 4572.869 kb on - strand at 4572.901 kb on + strand at 4573.191 kb on - strand, within HSERO_RS19925 at 4573.643 kb on - strand, within HSERO_RS19930 at 4573.733 kb on + strand, within HSERO_RS19930 at 4573.808 kb on + strand, within HSERO_RS19930 at 4574.142 kb on + strand, within HSERO_RS19930 at 4574.150 kb on - strand, within HSERO_RS19930 at 4574.358 kb on + strand, within HSERO_RS19930 at 4574.463 kb on - strand, within HSERO_RS19930 at 4574.474 kb on - strand, within HSERO_RS19930 at 4574.585 kb on + strand, within HSERO_RS19930 at 4574.998 kb on - strand at 4575.377 kb on + strand, within HSERO_RS19935 at 4575.443 kb on + strand, within HSERO_RS19935 at 4575.593 kb on + strand, within HSERO_RS19935 at 4575.666 kb on - strand, within HSERO_RS19935 at 4575.735 kb on - strand, within HSERO_RS19935
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 4,572,614 + HSERO_RS19920 0.68 -0.1 4,572,653 - HSERO_RS19920 0.74 -0.3 4,572,680 - HSERO_RS19920 0.78 -0.4 4,572,861 + -2.0 4,572,869 - +0.5 4,572,901 + +0.9 4,573,191 - HSERO_RS19925 0.66 -1.0 4,573,643 - HSERO_RS19930 0.13 -0.6 4,573,733 + HSERO_RS19930 0.20 +1.9 4,573,808 + HSERO_RS19930 0.25 +0.8 4,574,142 + HSERO_RS19930 0.49 -0.7 4,574,150 - HSERO_RS19930 0.50 -0.7 4,574,358 + HSERO_RS19930 0.65 -0.0 4,574,463 - HSERO_RS19930 0.73 +0.5 4,574,474 - HSERO_RS19930 0.74 -0.6 4,574,585 + HSERO_RS19930 0.82 +0.2 4,574,998 - -0.3 4,575,377 + HSERO_RS19935 0.39 +0.0 4,575,443 + HSERO_RS19935 0.44 -0.5 4,575,593 + HSERO_RS19935 0.56 +0.8 4,575,666 - HSERO_RS19935 0.62 -0.1 4,575,735 - HSERO_RS19935 0.67 +0.3
Or see this region's nucleotide sequence