Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18845 and HSERO_RS18850 are separated by 18 nucleotides HSERO_RS18850 and HSERO_RS18855 are separated by 9 nucleotides HSERO_RS18855 and HSERO_RS18860 are separated by 243 nucleotides HSERO_RS18860 and HSERO_RS18865 are separated by 38 nucleotides
HSERO_RS18845: HSERO_RS18845 - hypothetical protein, at 4,322,879 to 4,323,451
_RS18845
HSERO_RS18850: HSERO_RS18850 - transcriptional regulator, at 4,323,470 to 4,324,180
_RS18850
HSERO_RS18855: HSERO_RS18855 - sensor protein KdpD, at 4,324,190 to 4,326,946
_RS18855
HSERO_RS18860: HSERO_RS18860 - potassium-transporting ATPase subunit C, at 4,327,190 to 4,327,801
_RS18860
HSERO_RS18865: HSERO_RS18865 - potassium-transporting ATPase subunit B, at 4,327,840 to 4,330,032
_RS18865
Position (kb) 4324
4325
4326
4327 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4323.453 kb on + strand at 4323.516 kb on + strand at 4323.571 kb on + strand, within HSERO_RS18850 at 4323.731 kb on + strand, within HSERO_RS18850 at 4324.113 kb on + strand at 4324.113 kb on + strand at 4324.131 kb on - strand at 4324.157 kb on - strand at 4324.228 kb on + strand at 4324.301 kb on - strand at 4324.321 kb on + strand at 4324.431 kb on + strand at 4324.593 kb on - strand, within HSERO_RS18855 at 4324.846 kb on - strand, within HSERO_RS18855 at 4324.855 kb on + strand, within HSERO_RS18855 at 4324.877 kb on - strand, within HSERO_RS18855 at 4324.930 kb on + strand, within HSERO_RS18855 at 4324.940 kb on + strand, within HSERO_RS18855 at 4325.198 kb on - strand, within HSERO_RS18855 at 4325.228 kb on - strand, within HSERO_RS18855 at 4325.228 kb on - strand, within HSERO_RS18855 at 4325.331 kb on + strand, within HSERO_RS18855 at 4326.357 kb on + strand, within HSERO_RS18855 at 4326.830 kb on + strand at 4326.976 kb on - strand at 4327.164 kb on - strand at 4327.164 kb on - strand at 4327.175 kb on + strand at 4327.195 kb on - strand at 4327.245 kb on + strand at 4327.287 kb on - strand, within HSERO_RS18860 at 4327.489 kb on + strand, within HSERO_RS18860 at 4327.646 kb on + strand, within HSERO_RS18860 at 4327.786 kb on + strand at 4327.856 kb on - strand at 4327.856 kb on - strand at 4327.895 kb on + strand at 4327.929 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 4,323,453 + -1.5 4,323,516 + -0.9 4,323,571 + HSERO_RS18850 0.14 +0.9 4,323,731 + HSERO_RS18850 0.37 -0.7 4,324,113 + -1.6 4,324,113 + +1.8 4,324,131 - +0.6 4,324,157 - -0.2 4,324,228 + +0.0 4,324,301 - -0.2 4,324,321 + +0.2 4,324,431 + +0.0 4,324,593 - HSERO_RS18855 0.15 -2.1 4,324,846 - HSERO_RS18855 0.24 -2.5 4,324,855 + HSERO_RS18855 0.24 -0.6 4,324,877 - HSERO_RS18855 0.25 -3.6 4,324,930 + HSERO_RS18855 0.27 +0.6 4,324,940 + HSERO_RS18855 0.27 +0.2 4,325,198 - HSERO_RS18855 0.37 -3.4 4,325,228 - HSERO_RS18855 0.38 -3.2 4,325,228 - HSERO_RS18855 0.38 -2.9 4,325,331 + HSERO_RS18855 0.41 +0.6 4,326,357 + HSERO_RS18855 0.79 +0.3 4,326,830 + -2.8 4,326,976 - -0.4 4,327,164 - +0.5 4,327,164 - +0.3 4,327,175 + +0.1 4,327,195 - -0.7 4,327,245 + +0.7 4,327,287 - HSERO_RS18860 0.16 -0.7 4,327,489 + HSERO_RS18860 0.49 +0.0 4,327,646 + HSERO_RS18860 0.75 -0.7 4,327,786 + +2.7 4,327,856 - -0.4 4,327,856 - +1.3 4,327,895 + -0.1 4,327,929 - +0.5
Or see this region's nucleotide sequence