Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18810 and HSERO_RS18815 are separated by 13 nucleotides HSERO_RS18815 and HSERO_RS18820 are separated by 327 nucleotides HSERO_RS18820 and HSERO_RS18825 are separated by 8 nucleotides
HSERO_RS18810: HSERO_RS18810 - 4-hydroxyphenylpyruvate dioxygenase, at 4,315,278 to 4,316,030
_RS18810
HSERO_RS18815: HSERO_RS18815 - dihydropteridine reductase, at 4,316,044 to 4,316,697
_RS18815
HSERO_RS18820: HSERO_RS18820 - LysR family transcriptional regulator, at 4,317,025 to 4,317,930
_RS18820
HSERO_RS18825: HSERO_RS18825 - membrane protein, at 4,317,939 to 4,318,913
_RS18825
Position (kb) 4317
4318 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4316.034 kb on - strand at 4316.058 kb on + strand at 4316.154 kb on - strand, within HSERO_RS18815 at 4316.254 kb on + strand, within HSERO_RS18815 at 4316.323 kb on + strand, within HSERO_RS18815 at 4316.357 kb on - strand, within HSERO_RS18815 at 4316.456 kb on - strand, within HSERO_RS18815 at 4316.599 kb on - strand, within HSERO_RS18815 at 4316.724 kb on - strand at 4316.727 kb on - strand at 4316.908 kb on + strand at 4316.967 kb on + strand at 4316.975 kb on - strand at 4316.975 kb on - strand at 4316.975 kb on - strand at 4317.007 kb on + strand at 4317.120 kb on + strand, within HSERO_RS18820 at 4317.182 kb on + strand, within HSERO_RS18820 at 4317.389 kb on + strand, within HSERO_RS18820 at 4317.461 kb on - strand, within HSERO_RS18820 at 4317.840 kb on - strand at 4317.945 kb on - strand at 4317.995 kb on + strand at 4318.103 kb on + strand, within HSERO_RS18825 at 4318.133 kb on - strand, within HSERO_RS18825 at 4318.133 kb on - strand, within HSERO_RS18825 at 4318.193 kb on + strand, within HSERO_RS18825 at 4318.238 kb on + strand, within HSERO_RS18825 at 4318.268 kb on - strand, within HSERO_RS18825 at 4318.310 kb on - strand, within HSERO_RS18825 at 4318.332 kb on - strand, within HSERO_RS18825 at 4318.619 kb on + strand, within HSERO_RS18825 at 4318.627 kb on - strand, within HSERO_RS18825 at 4318.769 kb on + strand, within HSERO_RS18825 at 4318.920 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 4,316,034 - -0.2 4,316,058 + +0.7 4,316,154 - HSERO_RS18815 0.17 -0.6 4,316,254 + HSERO_RS18815 0.32 +0.7 4,316,323 + HSERO_RS18815 0.43 +0.7 4,316,357 - HSERO_RS18815 0.48 -0.6 4,316,456 - HSERO_RS18815 0.63 -0.7 4,316,599 - HSERO_RS18815 0.85 +0.9 4,316,724 - -0.4 4,316,727 - -0.4 4,316,908 + -0.0 4,316,967 + -1.7 4,316,975 - +0.5 4,316,975 - -1.7 4,316,975 - -0.4 4,317,007 + -2.0 4,317,120 + HSERO_RS18820 0.10 -0.4 4,317,182 + HSERO_RS18820 0.17 -0.2 4,317,389 + HSERO_RS18820 0.40 -1.3 4,317,461 - HSERO_RS18820 0.48 +0.1 4,317,840 - -1.2 4,317,945 - -0.3 4,317,995 + -0.9 4,318,103 + HSERO_RS18825 0.17 +1.6 4,318,133 - HSERO_RS18825 0.20 +1.0 4,318,133 - HSERO_RS18825 0.20 +0.0 4,318,193 + HSERO_RS18825 0.26 +0.6 4,318,238 + HSERO_RS18825 0.31 +2.0 4,318,268 - HSERO_RS18825 0.34 -0.8 4,318,310 - HSERO_RS18825 0.38 +0.9 4,318,332 - HSERO_RS18825 0.40 +0.0 4,318,619 + HSERO_RS18825 0.70 +0.7 4,318,627 - HSERO_RS18825 0.71 +0.6 4,318,769 + HSERO_RS18825 0.85 +0.6 4,318,920 + -0.3
Or see this region's nucleotide sequence