Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09655

Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS09650 and HSERO_RS09655 are separated by 1 nucleotidesHSERO_RS09655 and HSERO_RS09660 are separated by 193 nucleotides HSERO_RS09650: HSERO_RS09650 - elongation factor 4, at 2,190,206 to 2,191,999 _RS09650 HSERO_RS09655: HSERO_RS09655 - signal peptidase, at 2,192,001 to 2,192,915 _RS09655 HSERO_RS09660: HSERO_RS09660 - ribonuclease III, at 2,193,109 to 2,194,068 _RS09660 Position (kb) 2192 2193Strain fitness (log2 ratio) -3 -2 -1 0 1at 2191.256 kb on + strand, within HSERO_RS09650at 2191.457 kb on + strand, within HSERO_RS09650at 2193.055 kb on - strandat 2193.551 kb on + strand, within HSERO_RS09660at 2193.800 kb on + strand, within HSERO_RS09660

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
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2,191,256 + HSERO_RS09650 0.59 -1.1
2,191,457 + HSERO_RS09650 0.70 -2.5
2,193,055 - -1.1
2,193,551 + HSERO_RS09660 0.46 -3.4
2,193,800 + HSERO_RS09660 0.72 -1.1

Or see this region's nucleotide sequence