Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03855 and HSERO_RS03860 are separated by 97 nucleotides HSERO_RS03860 and HSERO_RS03865 are separated by 275 nucleotides HSERO_RS03865 and HSERO_RS03870 are separated by 280 nucleotides
HSERO_RS03855: HSERO_RS03855 - hypothetical protein, at 852,354 to 853,280
_RS03855
HSERO_RS03860: HSERO_RS03860 - hypothetical protein, at 853,378 to 853,935
_RS03860
HSERO_RS03865: HSERO_RS03865 - hypothetical protein, at 854,211 to 854,615
_RS03865
HSERO_RS03870: HSERO_RS03870 - hypothetical protein, at 854,896 to 855,240
_RS03870
Position (kb) 853
854 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 852.458 kb on + strand, within HSERO_RS03855 at 852.738 kb on + strand at 852.814 kb on - strand, within HSERO_RS03855 at 852.819 kb on - strand, within HSERO_RS03855 at 852.838 kb on - strand, within HSERO_RS03855 at 852.897 kb on + strand, within HSERO_RS03855 at 852.913 kb on + strand, within HSERO_RS03855 at 852.993 kb on - strand at 853.004 kb on - strand, within HSERO_RS03855 at 853.056 kb on - strand, within HSERO_RS03855 at 853.100 kb on + strand, within HSERO_RS03855 at 853.145 kb on - strand, within HSERO_RS03855 at 853.150 kb on - strand, within HSERO_RS03855 at 853.179 kb on + strand, within HSERO_RS03855 at 853.244 kb on - strand at 853.284 kb on - strand at 853.378 kb on + strand at 853.378 kb on + strand at 853.386 kb on - strand at 853.681 kb on + strand, within HSERO_RS03860 at 853.792 kb on - strand, within HSERO_RS03860 at 853.792 kb on - strand, within HSERO_RS03860 at 853.822 kb on - strand, within HSERO_RS03860 at 853.856 kb on - strand, within HSERO_RS03860 at 854.052 kb on + strand at 854.060 kb on - strand at 854.067 kb on - strand at 854.107 kb on + strand at 854.136 kb on - strand at 854.390 kb on + strand, within HSERO_RS03865 at 854.441 kb on - strand, within HSERO_RS03865 at 854.622 kb on - strand at 854.622 kb on - strand at 854.633 kb on + strand at 854.633 kb on + strand at 854.643 kb on - strand at 854.645 kb on + strand at 854.733 kb on - strand at 854.778 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 852,458 + HSERO_RS03855 0.11 -0.9 852,738 + +0.3 852,814 - HSERO_RS03855 0.50 -0.6 852,819 - HSERO_RS03855 0.50 -0.4 852,838 - HSERO_RS03855 0.52 -0.5 852,897 + HSERO_RS03855 0.59 +0.5 852,913 + HSERO_RS03855 0.60 +0.0 852,993 - -0.7 853,004 - HSERO_RS03855 0.70 -0.8 853,056 - HSERO_RS03855 0.76 -0.4 853,100 + HSERO_RS03855 0.80 -0.8 853,145 - HSERO_RS03855 0.85 -0.5 853,150 - HSERO_RS03855 0.86 +0.0 853,179 + HSERO_RS03855 0.89 -0.5 853,244 - -0.4 853,284 - -0.0 853,378 + +0.3 853,378 + +0.4 853,386 - +0.3 853,681 + HSERO_RS03860 0.54 -2.2 853,792 - HSERO_RS03860 0.74 -0.1 853,792 - HSERO_RS03860 0.74 -0.6 853,822 - HSERO_RS03860 0.80 +1.3 853,856 - HSERO_RS03860 0.86 +0.2 854,052 + +2.7 854,060 - +1.6 854,067 - +0.0 854,107 + -0.4 854,136 - +0.5 854,390 + HSERO_RS03865 0.44 -0.4 854,441 - HSERO_RS03865 0.57 +0.2 854,622 - +1.3 854,622 - -0.1 854,633 + -1.1 854,633 + +0.4 854,643 - +0.1 854,645 + +3.3 854,733 - -0.9 854,778 - -3.2
Or see this region's nucleotide sequence