Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02435 and HSERO_RS02440 are separated by 151 nucleotides HSERO_RS02440 and HSERO_RS02445 are separated by 98 nucleotides HSERO_RS02445 and HSERO_RS02450 are separated by 45 nucleotides HSERO_RS02450 and HSERO_RS02455 are separated by 284 nucleotides
HSERO_RS02435: HSERO_RS02435 - protein-L-isoaspartate O-methyltransferase, at 533,595 to 534,260
_RS02435
HSERO_RS02440: HSERO_RS02440 - TetR family transcriptional regulator, at 534,412 to 535,041
_RS02440
HSERO_RS02445: HSERO_RS02445 - proteinase inhibitor, at 535,140 to 535,436
_RS02445
HSERO_RS02450: HSERO_RS02450 - arsenate reductase, at 535,482 to 535,835
_RS02450
HSERO_RS02455: HSERO_RS02455 - UDP pyrophosphate phosphatase, at 536,120 to 536,974
_RS02455
Position (kb) 535
536 Strain fitness (log2 ratio) -1
0
1 at 534.329 kb on - strand at 534.366 kb on - strand at 535.251 kb on + strand, within HSERO_RS02445 at 535.256 kb on + strand, within HSERO_RS02445 at 535.400 kb on - strand, within HSERO_RS02445 at 535.532 kb on + strand, within HSERO_RS02450 at 535.662 kb on - strand, within HSERO_RS02450 at 535.849 kb on - strand at 535.949 kb on + strand at 535.983 kb on + strand at 535.983 kb on + strand at 536.174 kb on + strand at 536.241 kb on + strand, within HSERO_RS02455 at 536.241 kb on + strand, within HSERO_RS02455 at 536.241 kb on + strand, within HSERO_RS02455 at 536.313 kb on + strand, within HSERO_RS02455 at 536.420 kb on + strand, within HSERO_RS02455
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 534,329 - -0.2 534,366 - +0.1 535,251 + HSERO_RS02445 0.37 +0.2 535,256 + HSERO_RS02445 0.39 -0.6 535,400 - HSERO_RS02445 0.88 -0.1 535,532 + HSERO_RS02450 0.14 -1.5 535,662 - HSERO_RS02450 0.51 -0.7 535,849 - -0.3 535,949 + +0.7 535,983 + +1.3 535,983 + -1.2 536,174 + +0.7 536,241 + HSERO_RS02455 0.14 -0.1 536,241 + HSERO_RS02455 0.14 +0.7 536,241 + HSERO_RS02455 0.14 -0.9 536,313 + HSERO_RS02455 0.23 -0.4 536,420 + HSERO_RS02455 0.35 -0.0
Or see this region's nucleotide sequence