Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00837

Experiment: PYE with perchlorate 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00836 and CCNA_00837 are separated by 110 nucleotidesCCNA_00837 and CCNA_00838 are separated by 160 nucleotides CCNA_00836: CCNA_00836 - flagellin FljO, at 902,191 to 903,012 _00836 CCNA_00837: CCNA_00837 - alpha-L-fucosidase, at 903,123 to 904,739 _00837 CCNA_00838: CCNA_00838 - alpha-glucosidase, at 904,900 to 906,873 _00838 Position (kb) 903 904 905Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 902.130 kb on + strandat 902.177 kb on - strandat 902.177 kb on - strandat 902.194 kb on + strandat 902.202 kb on - strandat 902.258 kb on + strandat 902.263 kb on + strandat 902.266 kb on - strandat 902.314 kb on + strand, within CCNA_00836at 902.322 kb on + strand, within CCNA_00836at 902.322 kb on - strand, within CCNA_00836at 902.322 kb on - strand, within CCNA_00836at 902.327 kb on - strand, within CCNA_00836at 902.331 kb on + strand, within CCNA_00836at 902.340 kb on - strand, within CCNA_00836at 902.440 kb on - strand, within CCNA_00836at 902.488 kb on + strand, within CCNA_00836at 902.488 kb on + strand, within CCNA_00836at 902.500 kb on + strand, within CCNA_00836at 902.510 kb on - strand, within CCNA_00836at 902.510 kb on - strand, within CCNA_00836at 902.517 kb on + strand, within CCNA_00836at 902.557 kb on + strand, within CCNA_00836at 902.559 kb on + strand, within CCNA_00836at 902.570 kb on - strand, within CCNA_00836at 902.570 kb on - strand, within CCNA_00836at 902.623 kb on + strand, within CCNA_00836at 902.625 kb on + strand, within CCNA_00836at 902.632 kb on + strand, within CCNA_00836at 902.664 kb on - strand, within CCNA_00836at 902.692 kb on + strand, within CCNA_00836at 902.698 kb on + strand, within CCNA_00836at 902.700 kb on - strand, within CCNA_00836at 902.706 kb on - strand, within CCNA_00836at 902.719 kb on - strand, within CCNA_00836at 902.725 kb on - strand, within CCNA_00836at 902.851 kb on + strand, within CCNA_00836at 902.851 kb on + strand, within CCNA_00836at 902.860 kb on + strand, within CCNA_00836at 902.861 kb on + strand, within CCNA_00836at 902.861 kb on + strand, within CCNA_00836at 902.872 kb on + strand, within CCNA_00836at 902.886 kb on + strand, within CCNA_00836at 902.904 kb on - strand, within CCNA_00836at 903.013 kb on + strandat 903.036 kb on - strandat 903.064 kb on + strandat 903.072 kb on - strandat 903.111 kb on + strandat 903.126 kb on + strandat 903.129 kb on - strandat 903.131 kb on + strandat 903.134 kb on - strandat 903.166 kb on + strandat 903.213 kb on - strandat 903.220 kb on - strandat 903.233 kb on - strandat 903.233 kb on - strandat 903.233 kb on - strandat 903.252 kb on - strandat 903.264 kb on + strandat 903.266 kb on + strandat 903.266 kb on + strandat 903.266 kb on + strandat 903.269 kb on - strandat 903.274 kb on - strandat 903.312 kb on + strand, within CCNA_00837at 903.312 kb on + strand, within CCNA_00837at 903.320 kb on - strand, within CCNA_00837at 903.320 kb on - strand, within CCNA_00837at 903.320 kb on - strand, within CCNA_00837at 903.320 kb on - strand, within CCNA_00837at 903.324 kb on + strand, within CCNA_00837at 903.325 kb on + strandat 903.333 kb on - strand, within CCNA_00837at 903.333 kb on - strand, within CCNA_00837at 903.335 kb on - strand, within CCNA_00837at 903.342 kb on - strand, within CCNA_00837at 903.367 kb on + strand, within CCNA_00837at 903.404 kb on - strand, within CCNA_00837at 903.411 kb on - strand, within CCNA_00837at 903.436 kb on - strand, within CCNA_00837at 903.447 kb on - strand, within CCNA_00837at 903.447 kb on - strand, within CCNA_00837at 903.447 kb on - strand, within CCNA_00837at 903.447 kb on - strand, within CCNA_00837at 903.447 kb on - strand, within CCNA_00837at 903.464 kb on + strand, within CCNA_00837at 903.471 kb on - strand, within CCNA_00837at 903.552 kb on + strand, within CCNA_00837at 903.555 kb on - strand, within CCNA_00837at 903.593 kb on + strand, within CCNA_00837at 903.616 kb on + strand, within CCNA_00837at 903.658 kb on - strand, within CCNA_00837at 903.672 kb on + strand, within CCNA_00837at 903.672 kb on + strand, within CCNA_00837at 903.679 kb on - strand, within CCNA_00837at 903.690 kb on - strand, within CCNA_00837at 903.694 kb on + strand, within CCNA_00837at 903.761 kb on + strandat 903.797 kb on + strand, within CCNA_00837at 903.805 kb on - strand, within CCNA_00837at 903.807 kb on - strand, within CCNA_00837at 903.809 kb on + strand, within CCNA_00837at 903.839 kb on + strand, within CCNA_00837at 903.883 kb on + strand, within CCNA_00837at 903.957 kb on - strand, within CCNA_00837at 903.967 kb on + strand, within CCNA_00837at 903.978 kb on + strand, within CCNA_00837at 904.038 kb on + strand, within CCNA_00837at 904.047 kb on - strand, within CCNA_00837at 904.055 kb on + strand, within CCNA_00837at 904.074 kb on - strand, within CCNA_00837at 904.074 kb on - strand, within CCNA_00837at 904.074 kb on - strand, within CCNA_00837at 904.079 kb on - strand, within CCNA_00837at 904.090 kb on + strand, within CCNA_00837at 904.098 kb on - strand, within CCNA_00837at 904.100 kb on + strand, within CCNA_00837at 904.103 kb on - strand, within CCNA_00837at 904.108 kb on - strand, within CCNA_00837at 904.116 kb on + strand, within CCNA_00837at 904.116 kb on + strand, within CCNA_00837at 904.124 kb on - strand, within CCNA_00837at 904.124 kb on - strand, within CCNA_00837at 904.133 kb on + strand, within CCNA_00837at 904.149 kb on + strand, within CCNA_00837at 904.149 kb on + strand, within CCNA_00837at 904.150 kb on + strand, within CCNA_00837at 904.157 kb on - strand, within CCNA_00837at 904.157 kb on - strand, within CCNA_00837at 904.190 kb on + strandat 904.199 kb on + strand, within CCNA_00837at 904.206 kb on + strand, within CCNA_00837at 904.214 kb on - strand, within CCNA_00837at 904.214 kb on - strand, within CCNA_00837at 904.214 kb on - strand, within CCNA_00837at 904.229 kb on + strand, within CCNA_00837at 904.247 kb on - strand, within CCNA_00837at 904.269 kb on - strand, within CCNA_00837at 904.278 kb on + strand, within CCNA_00837at 904.317 kb on + strand, within CCNA_00837at 904.377 kb on - strand, within CCNA_00837at 904.377 kb on - strand, within CCNA_00837at 904.382 kb on - strand, within CCNA_00837at 904.395 kb on + strandat 904.395 kb on + strand, within CCNA_00837at 904.414 kb on + strand, within CCNA_00837at 904.422 kb on - strand, within CCNA_00837at 904.423 kb on - strand, within CCNA_00837at 904.429 kb on + strand, within CCNA_00837at 904.455 kb on + strand, within CCNA_00837at 904.458 kb on - strand, within CCNA_00837at 904.463 kb on - strand, within CCNA_00837at 904.536 kb on - strand, within CCNA_00837at 904.553 kb on + strand, within CCNA_00837at 904.581 kb on - strandat 904.592 kb on + strandat 904.621 kb on - strandat 904.625 kb on + strandat 904.667 kb on - strandat 904.695 kb on + strandat 904.717 kb on + strandat 904.724 kb on + strandat 904.742 kb on - strandat 904.766 kb on - strandat 904.787 kb on - strandat 904.791 kb on + strandat 904.793 kb on - strandat 904.801 kb on + strandat 904.805 kb on + strandat 904.806 kb on + strandat 904.815 kb on - strandat 904.851 kb on + strandat 904.859 kb on - strandat 904.859 kb on - strandat 904.859 kb on - strandat 904.861 kb on + strandat 904.861 kb on + strandat 904.861 kb on + strandat 904.869 kb on - strandat 904.869 kb on - strandat 904.869 kb on - strandat 904.869 kb on - strandat 904.869 kb on - strandat 904.869 kb on - strandat 904.869 kb on - strandat 904.896 kb on + strandat 904.912 kb on + strandat 904.974 kb on - strandat 905.004 kb on + strandat 905.034 kb on + strandat 905.044 kb on + strandat 905.046 kb on - strandat 905.100 kb on - strand, within CCNA_00838at 905.107 kb on - strand, within CCNA_00838at 905.120 kb on + strand, within CCNA_00838at 905.121 kb on - strand, within CCNA_00838at 905.128 kb on - strand, within CCNA_00838at 905.138 kb on + strand, within CCNA_00838at 905.151 kb on - strand, within CCNA_00838at 905.151 kb on - strand, within CCNA_00838at 905.178 kb on + strand, within CCNA_00838at 905.178 kb on + strand, within CCNA_00838at 905.178 kb on + strand, within CCNA_00838at 905.186 kb on - strand, within CCNA_00838at 905.186 kb on - strand, within CCNA_00838at 905.186 kb on - strand, within CCNA_00838at 905.186 kb on - strand, within CCNA_00838at 905.196 kb on - strand, within CCNA_00838at 905.203 kb on + strand, within CCNA_00838at 905.203 kb on + strand, within CCNA_00838at 905.211 kb on - strand, within CCNA_00838at 905.217 kb on - strand, within CCNA_00838at 905.229 kb on + strand, within CCNA_00838at 905.236 kb on + strand, within CCNA_00838at 905.248 kb on + strand, within CCNA_00838at 905.248 kb on + strand, within CCNA_00838at 905.248 kb on + strand, within CCNA_00838at 905.248 kb on + strand, within CCNA_00838at 905.248 kb on + strand, within CCNA_00838at 905.248 kb on + strand, within CCNA_00838at 905.256 kb on - strand, within CCNA_00838at 905.257 kb on - strand, within CCNA_00838at 905.263 kb on - strand, within CCNA_00838at 905.272 kb on + strand, within CCNA_00838at 905.272 kb on + strand, within CCNA_00838at 905.272 kb on + strand, within CCNA_00838at 905.280 kb on + strand, within CCNA_00838at 905.280 kb on - strand, within CCNA_00838at 905.280 kb on - strand, within CCNA_00838at 905.280 kb on - strand, within CCNA_00838at 905.280 kb on - strand, within CCNA_00838at 905.311 kb on + strand, within CCNA_00838at 905.336 kb on - strand, within CCNA_00838at 905.347 kb on + strand, within CCNA_00838at 905.362 kb on - strand, within CCNA_00838at 905.421 kb on + strand, within CCNA_00838at 905.461 kb on + strand, within CCNA_00838at 905.461 kb on + strand, within CCNA_00838at 905.461 kb on + strandat 905.461 kb on + strand, within CCNA_00838at 905.469 kb on - strand, within CCNA_00838at 905.469 kb on - strand, within CCNA_00838at 905.490 kb on + strand, within CCNA_00838at 905.498 kb on - strand, within CCNA_00838at 905.499 kb on + strand, within CCNA_00838at 905.500 kb on - strand, within CCNA_00838at 905.515 kb on + strand, within CCNA_00838at 905.523 kb on - strand, within CCNA_00838at 905.540 kb on - strand, within CCNA_00838at 905.573 kb on + strand, within CCNA_00838at 905.586 kb on - strand, within CCNA_00838at 905.600 kb on - strand, within CCNA_00838at 905.625 kb on + strand, within CCNA_00838at 905.636 kb on + strand, within CCNA_00838at 905.644 kb on - strand, within CCNA_00838at 905.695 kb on + strand, within CCNA_00838

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with perchlorate 25 mM
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902,130 + -1.0
902,177 - -1.9
902,177 - -0.2
902,194 + -2.0
902,202 - -0.2
902,258 + -0.4
902,263 + -1.1
902,266 - -1.7
902,314 + CCNA_00836 0.15 -2.1
902,322 + CCNA_00836 0.16 -1.0
902,322 - CCNA_00836 0.16 -0.8
902,322 - CCNA_00836 0.16 +0.6
902,327 - CCNA_00836 0.17 -0.5
902,331 + CCNA_00836 0.17 -0.4
902,340 - CCNA_00836 0.18 -1.1
902,440 - CCNA_00836 0.30 +1.4
902,488 + CCNA_00836 0.36 -0.5
902,488 + CCNA_00836 0.36 +0.8
902,500 + CCNA_00836 0.38 -0.1
902,510 - CCNA_00836 0.39 -1.2
902,510 - CCNA_00836 0.39 -0.5
902,517 + CCNA_00836 0.40 -0.5
902,557 + CCNA_00836 0.45 -2.8
902,559 + CCNA_00836 0.45 +1.9
902,570 - CCNA_00836 0.46 -0.4
902,570 - CCNA_00836 0.46 -0.2
902,623 + CCNA_00836 0.53 -0.4
902,625 + CCNA_00836 0.53 +0.0
902,632 + CCNA_00836 0.54 -0.8
902,664 - CCNA_00836 0.58 -2.2
902,692 + CCNA_00836 0.61 +0.3
902,698 + CCNA_00836 0.62 +0.4
902,700 - CCNA_00836 0.62 -1.2
902,706 - CCNA_00836 0.63 -0.1
902,719 - CCNA_00836 0.64 +2.4
902,725 - CCNA_00836 0.65 -0.9
902,851 + CCNA_00836 0.80 -0.1
902,851 + CCNA_00836 0.80 +0.8
902,860 + CCNA_00836 0.81 -0.3
902,861 + CCNA_00836 0.82 +0.2
902,861 + CCNA_00836 0.82 +0.6
902,872 + CCNA_00836 0.83 +1.0
902,886 + CCNA_00836 0.85 -0.0
902,904 - CCNA_00836 0.87 +0.1
903,013 + +0.4
903,036 - -0.1
903,064 + +1.2
903,072 - +0.1
903,111 + -0.7
903,126 + +1.1
903,129 - -0.9
903,131 + -0.4
903,134 - -1.4
903,166 + -0.4
903,213 - -0.0
903,220 - +0.8
903,233 - -0.4
903,233 - +0.1
903,233 - -0.5
903,252 - +0.5
903,264 + -0.3
903,266 + -0.1
903,266 + +0.4
903,266 + +0.7
903,269 - +0.8
903,274 - -0.5
903,312 + CCNA_00837 0.12 -2.3
903,312 + CCNA_00837 0.12 -0.7
903,320 - CCNA_00837 0.12 -0.2
903,320 - CCNA_00837 0.12 +0.4
903,320 - CCNA_00837 0.12 -0.6
903,320 - CCNA_00837 0.12 +0.1
903,324 + CCNA_00837 0.12 -1.5
903,325 + +0.4
903,333 - CCNA_00837 0.13 +0.6
903,333 - CCNA_00837 0.13 -1.2
903,335 - CCNA_00837 0.13 +0.5
903,342 - CCNA_00837 0.14 -1.0
903,367 + CCNA_00837 0.15 -0.4
903,404 - CCNA_00837 0.17 -0.5
903,411 - CCNA_00837 0.18 -0.8
903,436 - CCNA_00837 0.19 -1.3
903,447 - CCNA_00837 0.20 -1.2
903,447 - CCNA_00837 0.20 +1.9
903,447 - CCNA_00837 0.20 -1.8
903,447 - CCNA_00837 0.20 -0.5
903,447 - CCNA_00837 0.20 -0.8
903,464 + CCNA_00837 0.21 -1.2
903,471 - CCNA_00837 0.22 +0.1
903,552 + CCNA_00837 0.27 -1.4
903,555 - CCNA_00837 0.27 +0.6
903,593 + CCNA_00837 0.29 +0.1
903,616 + CCNA_00837 0.30 -1.2
903,658 - CCNA_00837 0.33 -0.9
903,672 + CCNA_00837 0.34 +0.6
903,672 + CCNA_00837 0.34 -0.7
903,679 - CCNA_00837 0.34 +0.5
903,690 - CCNA_00837 0.35 -1.5
903,694 + CCNA_00837 0.35 -1.7
903,761 + +1.6
903,797 + CCNA_00837 0.42 -0.6
903,805 - CCNA_00837 0.42 -0.8
903,807 - CCNA_00837 0.42 +0.2
903,809 + CCNA_00837 0.42 -0.3
903,839 + CCNA_00837 0.44 +0.2
903,883 + CCNA_00837 0.47 -0.2
903,957 - CCNA_00837 0.52 -0.6
903,967 + CCNA_00837 0.52 +1.4
903,978 + CCNA_00837 0.53 -0.7
904,038 + CCNA_00837 0.57 +0.1
904,047 - CCNA_00837 0.57 -2.4
904,055 + CCNA_00837 0.58 -1.5
904,074 - CCNA_00837 0.59 -1.1
904,074 - CCNA_00837 0.59 -1.9
904,074 - CCNA_00837 0.59 -1.1
904,079 - CCNA_00837 0.59 -1.7
904,090 + CCNA_00837 0.60 +0.2
904,098 - CCNA_00837 0.60 -0.0
904,100 + CCNA_00837 0.60 -0.0
904,103 - CCNA_00837 0.61 -1.6
904,108 - CCNA_00837 0.61 -2.7
904,116 + CCNA_00837 0.61 -0.1
904,116 + CCNA_00837 0.61 -2.0
904,124 - CCNA_00837 0.62 -1.9
904,124 - CCNA_00837 0.62 +0.8
904,133 + CCNA_00837 0.62 +0.6
904,149 + CCNA_00837 0.63 +0.1
904,149 + CCNA_00837 0.63 +0.2
904,150 + CCNA_00837 0.64 -3.1
904,157 - CCNA_00837 0.64 -0.6
904,157 - CCNA_00837 0.64 -0.5
904,190 + +1.4
904,199 + CCNA_00837 0.67 +0.4
904,206 + CCNA_00837 0.67 -0.9
904,214 - CCNA_00837 0.67 -1.0
904,214 - CCNA_00837 0.67 +1.4
904,214 - CCNA_00837 0.67 -1.7
904,229 + CCNA_00837 0.68 -1.7
904,247 - CCNA_00837 0.70 -0.9
904,269 - CCNA_00837 0.71 +0.9
904,278 + CCNA_00837 0.71 -1.9
904,317 + CCNA_00837 0.74 -0.9
904,377 - CCNA_00837 0.78 -1.0
904,377 - CCNA_00837 0.78 -1.8
904,382 - CCNA_00837 0.78 -0.6
904,395 + +0.4
904,395 + CCNA_00837 0.79 +0.9
904,414 + CCNA_00837 0.80 +0.4
904,422 - CCNA_00837 0.80 -2.5
904,423 - CCNA_00837 0.80 -2.1
904,429 + CCNA_00837 0.81 -0.6
904,455 + CCNA_00837 0.82 -0.6
904,458 - CCNA_00837 0.83 +0.6
904,463 - CCNA_00837 0.83 -0.4
904,536 - CCNA_00837 0.87 -0.4
904,553 + CCNA_00837 0.88 +2.9
904,581 - -1.6
904,592 + +0.4
904,621 - -0.4
904,625 + +0.4
904,667 - -2.6
904,695 + -0.9
904,717 + -0.8
904,724 + -0.6
904,742 - -1.9
904,766 - -0.6
904,787 - +0.4
904,791 + -2.1
904,793 - -0.9
904,801 + -2.0
904,805 + -1.9
904,806 + +0.3
904,815 - +0.4
904,851 + +0.3
904,859 - +0.7
904,859 - -1.7
904,859 - +1.1
904,861 + -0.8
904,861 + -0.5
904,861 + -1.0
904,869 - -0.4
904,869 - -1.8
904,869 - -0.0
904,869 - +0.3
904,869 - -1.1
904,869 - -0.6
904,869 - +0.5
904,896 + -2.8
904,912 + -1.2
904,974 - +0.1
905,004 + -0.0
905,034 + -0.8
905,044 + -2.6
905,046 - -0.1
905,100 - CCNA_00838 0.10 -0.2
905,107 - CCNA_00838 0.10 -1.2
905,120 + CCNA_00838 0.11 +1.0
905,121 - CCNA_00838 0.11 -1.5
905,128 - CCNA_00838 0.12 +1.7
905,138 + CCNA_00838 0.12 -1.8
905,151 - CCNA_00838 0.13 -2.0
905,151 - CCNA_00838 0.13 -0.9
905,178 + CCNA_00838 0.14 -0.3
905,178 + CCNA_00838 0.14 -0.0
905,178 + CCNA_00838 0.14 -0.0
905,186 - CCNA_00838 0.14 +0.2
905,186 - CCNA_00838 0.14 +1.7
905,186 - CCNA_00838 0.14 -1.2
905,186 - CCNA_00838 0.14 -0.8
905,196 - CCNA_00838 0.15 -0.6
905,203 + CCNA_00838 0.15 +0.2
905,203 + CCNA_00838 0.15 -0.2
905,211 - CCNA_00838 0.16 -1.4
905,217 - CCNA_00838 0.16 -0.6
905,229 + CCNA_00838 0.17 -2.2
905,236 + CCNA_00838 0.17 -3.5
905,248 + CCNA_00838 0.18 -1.1
905,248 + CCNA_00838 0.18 -0.8
905,248 + CCNA_00838 0.18 -0.8
905,248 + CCNA_00838 0.18 -1.8
905,248 + CCNA_00838 0.18 -1.6
905,248 + CCNA_00838 0.18 +0.0
905,256 - CCNA_00838 0.18 -0.1
905,257 - CCNA_00838 0.18 -2.7
905,263 - CCNA_00838 0.18 +0.7
905,272 + CCNA_00838 0.19 -1.4
905,272 + CCNA_00838 0.19 -2.2
905,272 + CCNA_00838 0.19 -0.5
905,280 + CCNA_00838 0.19 -1.1
905,280 - CCNA_00838 0.19 +0.5
905,280 - CCNA_00838 0.19 -0.5
905,280 - CCNA_00838 0.19 -0.1
905,280 - CCNA_00838 0.19 +0.9
905,311 + CCNA_00838 0.21 +0.4
905,336 - CCNA_00838 0.22 +0.8
905,347 + CCNA_00838 0.23 +1.4
905,362 - CCNA_00838 0.23 -2.1
905,421 + CCNA_00838 0.26 -1.6
905,461 + CCNA_00838 0.28 -1.0
905,461 + CCNA_00838 0.28 -2.1
905,461 + +1.6
905,461 + CCNA_00838 0.28 -0.1
905,469 - CCNA_00838 0.29 -1.0
905,469 - CCNA_00838 0.29 +1.2
905,490 + CCNA_00838 0.30 -0.6
905,498 - CCNA_00838 0.30 -1.7
905,499 + CCNA_00838 0.30 -1.4
905,500 - CCNA_00838 0.30 +0.1
905,515 + CCNA_00838 0.31 -1.1
905,523 - CCNA_00838 0.32 -1.5
905,540 - CCNA_00838 0.32 -1.2
905,573 + CCNA_00838 0.34 -1.0
905,586 - CCNA_00838 0.35 -2.7
905,600 - CCNA_00838 0.35 +1.7
905,625 + CCNA_00838 0.37 +0.0
905,636 + CCNA_00838 0.37 -0.5
905,644 - CCNA_00838 0.38 -0.2
905,695 + CCNA_00838 0.40 +0.6

Or see this region's nucleotide sequence