Experiment: PYE with perchlorate 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00043 and CCNA_00044 are separated by 2 nucleotides CCNA_00044 and CCNA_00045 are separated by 258 nucleotides CCNA_00045 and CCNA_00046 are separated by 6 nucleotides
CCNA_00043: CCNA_00043 - N utilization substance protein A NusA, at 46,622 to 48,268
_00043
CCNA_00044: CCNA_00044 - ribosome maturation protein RimP, at 48,271 to 48,846
_00044
CCNA_00045: CCNA_00045 - inorganic pyrophosphatase, at 49,105 to 49,638
_00045
CCNA_00046: CCNA_00046 - hypothetical protein, at 49,645 to 50,031
_00046
Position (kb)
48
49 Strain fitness (log2 ratio)
-1
0
1
2 at 48.277 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.367 kb on - strand, within CCNA_00044 at 48.367 kb on - strand, within CCNA_00044 at 48.377 kb on - strand, within CCNA_00044 at 48.385 kb on - strand, within CCNA_00044 at 48.403 kb on - strand, within CCNA_00044 at 48.438 kb on - strand, within CCNA_00044 at 48.478 kb on - strand, within CCNA_00044 at 48.478 kb on - strand, within CCNA_00044 at 48.495 kb on - strand, within CCNA_00044 at 48.576 kb on - strand, within CCNA_00044 at 48.662 kb on - strand, within CCNA_00044 at 49.019 kb on - strand at 49.039 kb on + strand at 49.648 kb on + strand at 49.648 kb on + strand at 49.656 kb on - strand at 49.673 kb on + strand at 49.681 kb on - strand at 49.681 kb on - strand at 49.681 kb on - strand at 49.726 kb on + strand, within CCNA_00046 at 49.727 kb on - strand, within CCNA_00046 at 49.736 kb on - strand, within CCNA_00046 at 49.816 kb on - strand, within CCNA_00046 at 49.837 kb on + strand, within CCNA_00046 at 49.837 kb on + strand, within CCNA_00046 at 49.840 kb on - strand, within CCNA_00046 at 49.845 kb on - strand, within CCNA_00046 at 49.845 kb on - strand, within CCNA_00046
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with perchlorate 25 mM remove 48,277 - +1.4 48,302 - +1.5 48,302 - +1.3 48,302 - +1.3 48,302 - +1.3 48,302 - +1.5 48,302 - +1.6 48,302 - +1.8 48,302 - +1.3 48,367 - CCNA_00044 0.17 +1.8 48,367 - CCNA_00044 0.17 +0.5 48,377 - CCNA_00044 0.18 +1.5 48,385 - CCNA_00044 0.20 +0.4 48,403 - CCNA_00044 0.23 +1.3 48,438 - CCNA_00044 0.29 +1.8 48,478 - CCNA_00044 0.36 +1.3 48,478 - CCNA_00044 0.36 +0.6 48,495 - CCNA_00044 0.39 +2.4 48,576 - CCNA_00044 0.53 +1.0 48,662 - CCNA_00044 0.68 +1.2 49,019 - +0.3 49,039 + -1.0 49,648 + +1.6 49,648 + +1.8 49,656 - +0.0 49,673 + +0.3 49,681 - +0.4 49,681 - +1.0 49,681 - -0.6 49,726 + CCNA_00046 0.21 +0.4 49,727 - CCNA_00046 0.21 +0.1 49,736 - CCNA_00046 0.24 -0.8 49,816 - CCNA_00046 0.44 +0.2 49,837 + CCNA_00046 0.50 +0.8 49,837 + CCNA_00046 0.50 +0.5 49,840 - CCNA_00046 0.50 -0.8 49,845 - CCNA_00046 0.52 +0.1 49,845 - CCNA_00046 0.52 +0.4
Or see this region's nucleotide sequence