Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS21040

Experiment: Recovery broth with Tiamulin 2e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Tiamulin 2e-04 mM
1,886,010	+				+2.5
1,886,045	+				+2.7
1,886,046	+				+3.7
1,886,047	+				+3.2
1,886,053	-				+1.1
1,886,053	-				+0.1
1,886,057	+				+3.5
1,886,057	+				+2.8
1,886,057	+				+3.2
1,886,057	+				+3.3
1,886,057	+				+3.9
1,886,057	+				+2.5
1,886,057	+				+3.3
1,886,062	+				+3.0
1,886,065	-				+0.9
1,886,065	-				+0.4
1,886,065	-				+1.0
1,886,065	-				+0.7
1,886,076	-		BBR_RS21040	0.14	+0.9
1,886,119	+		BBR_RS21040	0.34	+3.9
1,886,143	-		BBR_RS21040	0.45	+1.5
1,886,148	+		BBR_RS21040	0.48	+3.3
1,886,172	-		BBR_RS21040	0.59	+1.1
1,886,260	+				+1.2
1,886,268	-				-0.3
1,886,277	+				+1.5
1,886,286	+				-1.7
1,886,328	-		BBR_RS18275	0.13	+0.8
1,886,336	+		BBR_RS18275	0.14	+1.2
1,886,370	+		BBR_RS18275	0.20	+3.0
1,886,375	+		BBR_RS18275	0.21	+1.4
1,886,375	+		BBR_RS18275	0.21	+1.4
1,886,378	-		BBR_RS18275	0.21	-1.4
1,886,381	+		BBR_RS18275	0.22	+1.7
1,886,389	-		BBR_RS18275	0.23	+1.0
1,886,389	-		BBR_RS18275	0.23	+0.5
1,886,415	+		BBR_RS18275	0.27	+1.6
1,886,423	+		BBR_RS18275	0.29	+1.1
1,886,500	+		BBR_RS18275	0.41	+0.7
1,886,507	+		BBR_RS18275	0.43	+1.1
1,886,507	+		BBR_RS18275	0.43	+2.0
1,886,520	-		BBR_RS18275	0.45	-1.4
1,886,520	-		BBR_RS18275	0.45	-0.0
1,886,526	+		BBR_RS18275	0.46	+2.2
1,886,526	+		BBR_RS18275	0.46	+2.1
1,886,535	+		BBR_RS18275	0.47	+1.4
1,886,608	+		BBR_RS18275	0.59	+1.2
1,886,609	+		BBR_RS18275	0.60	+2.2
1,886,609	+		BBR_RS18275	0.60	+1.3
1,886,641	+		BBR_RS18275	0.65	+1.3
1,886,644	-		BBR_RS18275	0.66	+0.2
1,886,665	-		BBR_RS18275	0.69	-1.3
1,886,676	+		BBR_RS18275	0.71	+2.7
1,886,678	+		BBR_RS18275	0.71	+3.9
1,886,684	-		BBR_RS18275	0.72	+0.0
1,886,690	-		BBR_RS18275	0.73	+1.5
1,886,691	-		BBR_RS18275	0.73	-0.9
1,886,691	-		BBR_RS18275	0.73	-0.7
1,886,692	-		BBR_RS18275	0.73	-0.4
1,886,707	-		BBR_RS18275	0.76	-0.1
1,886,714	+		BBR_RS18275	0.77	+1.6
1,886,722	+		BBR_RS18275	0.79	+2.5
1,886,747	-		BBR_RS18275	0.83	-0.3
1,886,752	-		BBR_RS18275	0.83	-0.2
1,886,752	-		BBR_RS18275	0.83	+0.5
1,886,754	+		BBR_RS18275	0.84	+1.9
1,886,754	+		BBR_RS18275	0.84	+2.5
1,886,770	-		BBR_RS18275	0.86	-0.0
1,886,779	-		BBR_RS18275	0.88	-2.4
1,886,779	-		BBR_RS18275	0.88	-0.6
1,886,786	-		BBR_RS18275	0.89	+0.2
1,886,798	+				+2.5
1,886,806	-				-0.2
1,886,858	+				+1.5
1,886,858	+				+0.6
1,886,870	+				+2.2
1,886,870	+				+2.5
1,886,870	+				+0.6
1,886,870	+				+1.0
1,886,870	+				+2.3
1,886,878	-		BBR_RS18280	0.12	-1.9
1,886,878	-		BBR_RS18280	0.12	-0.0
1,886,878	-		BBR_RS18280	0.12	-1.2
1,886,878	-		BBR_RS18280	0.12	-1.0
1,886,878	-		BBR_RS18280	0.12	+0.3
1,886,878	-		BBR_RS18280	0.12	+0.1
1,886,883	-		BBR_RS18280	0.14	-1.2
1,886,885	-		BBR_RS18280	0.15	-1.4
1,886,931	+		BBR_RS18280	0.33	+2.0
1,886,931	+		BBR_RS18280	0.33	+1.6
1,886,968	+		BBR_RS18280	0.48	+1.9
1,886,968	+		BBR_RS18280	0.48	+0.9
1,886,972	+		BBR_RS18280	0.50	+0.3
1,886,976	-		BBR_RS18280	0.51	+0.0
1,886,976	-		BBR_RS18280	0.51	+0.9
1,886,976	-		BBR_RS18280	0.51	-0.4
1,887,015	+		BBR_RS18280	0.67	+2.3
1,887,038	-		BBR_RS18280	0.76	-1.0
1,887,040	+		BBR_RS18280	0.77	+2.0
1,887,040	+		BBR_RS18280	0.77	+2.6
1,887,049	-		BBR_RS18280	0.80	+0.3
1,887,049	-		BBR_RS18280	0.80	-0.2
1,887,079	+				+2.7
1,887,101	-				+0.5
1,887,101	-				+0.2
1,887,101	-				+1.3
1,887,105	-				+1.3
1,887,113	+				+2.4
1,887,211	+				+3.4
1,887,211	+				-1.4
1,887,213	+				+0.6
1,887,213	+				+2.2
1,887,213	+				-1.3
1,887,220	+				+0.5
1,887,228	+				-2.1