Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS21015

Experiment: Recovery broth with Tiamulin 2e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Tiamulin 2e-04 mM
1,764,373	-				-1.6
1,764,381	-				-1.9
1,764,521	-		BBR_RS21015	0.40	-3.3
1,764,684	-		BBR_RS21015	0.85	-0.5
1,764,727	+				+0.6
1,764,745	+				+0.6
1,764,767	-				-0.3
1,764,767	-				+0.7
1,764,796	+				+1.0
1,764,804	+				-0.6
1,764,804	+				+1.4
1,764,804	-				-0.5
1,764,811	-				+1.1
1,764,819	-				+0.6
1,764,821	-				-1.3
1,764,858	-				+0.7
1,764,858	-				-0.5
1,764,928	+				-0.5
1,764,928	+				+0.9
1,764,928	+				+0.1
1,764,930	+				-0.0
1,764,930	+				+1.7
1,764,936	-				+0.6
1,764,938	-				+0.6
1,764,938	-				-0.1
1,764,940	+				-0.3
1,764,943	-				+0.0
1,764,948	-				+0.1
1,764,950	+				-0.3
1,764,962	+				+0.0
1,765,001	+				+0.3
1,765,001	+				+0.3
1,765,001	+				+0.0
1,765,008	+				+0.1
1,765,008	+				+0.3
1,765,009	-				+0.5
1,765,009	-				+0.8
1,765,009	-				+0.4
1,765,016	-				-0.2
1,765,016	-				+0.0
1,765,088	-				+0.6
1,765,088	-				+0.0
1,765,110	+				-0.2
1,765,118	-				+0.2
1,765,125	-		BBR_RS17750	0.10	+0.4
1,765,125	-		BBR_RS17750	0.10	-0.8
1,765,125	-		BBR_RS17750	0.10	+0.4
1,765,141	+		BBR_RS17750	0.12	+0.4
1,765,149	-		BBR_RS17750	0.12	+0.2
1,765,149	-		BBR_RS17750	0.12	-0.5
1,765,170	-		BBR_RS17750	0.15	+0.1
1,765,217	+		BBR_RS17750	0.19	-0.3
1,765,218	-		BBR_RS17750	0.19	-0.8
1,765,260	+		BBR_RS17750	0.24	+0.2
1,765,296	+		BBR_RS17750	0.27	+0.9
1,765,329	+		BBR_RS17750	0.30	+0.3
1,765,329	+		BBR_RS17750	0.30	-0.1
1,765,337	-		BBR_RS17750	0.31	-0.4
1,765,339	+		BBR_RS17750	0.31	-0.7
1,765,347	-		BBR_RS17750	0.32	+0.7
1,765,347	-		BBR_RS17750	0.32	-0.3
1,765,352	-		BBR_RS17750	0.33	+0.2
1,765,357	-		BBR_RS17750	0.33	+0.7
1,765,437	+		BBR_RS17750	0.41	-0.9
1,765,452	-		BBR_RS17750	0.43	+0.6
1,765,457	-		BBR_RS17750	0.43	-0.9
1,765,499	+		BBR_RS17750	0.47	+0.6
1,765,540	+		BBR_RS17750	0.51	-1.0
1,765,549	-		BBR_RS17750	0.52	+0.1
1,765,549	-		BBR_RS17750	0.52	-0.2
1,765,549	-		BBR_RS17750	0.52	+1.5
1,765,586	-		BBR_RS17750	0.56	-0.5
1,765,617	-		BBR_RS17750	0.59	+0.6
1,765,720	-		BBR_RS17750	0.69	+0.5
1,765,722	+		BBR_RS17750	0.70	+0.4
1,765,730	-		BBR_RS17750	0.70	+0.5