Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19760

Experiment: Recovery broth with Tiamulin 2e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Tiamulin 2e-04 mM
2,222,736	+		BBR_RS19755	0.36	-0.1
2,222,744	-		BBR_RS19755	0.37	-0.7
2,222,746	+		BBR_RS19755	0.37	-0.1
2,222,746	-		BBR_RS19755	0.37	+1.6
2,222,756	-		BBR_RS19755	0.38	+0.5
2,222,761	-		BBR_RS19755	0.38	+0.7
2,222,772	-		BBR_RS19755	0.39	-2.1
2,222,786	-		BBR_RS19755	0.40	-0.7
2,222,786	-		BBR_RS19755	0.40	-1.9
2,222,786	-		BBR_RS19755	0.40	+1.0
2,222,786	-		BBR_RS19755	0.40	+0.2
2,222,788	+		BBR_RS19755	0.40	-0.5
2,222,788	+		BBR_RS19755	0.40	+0.3
2,222,788	+		BBR_RS19755	0.40	-0.2
2,222,796	-		BBR_RS19755	0.40	+0.5
2,222,866	+		BBR_RS19755	0.45	-0.2
2,222,868	+		BBR_RS19755	0.45	-2.3
2,222,876	+		BBR_RS19755	0.46	+1.1
2,222,876	+		BBR_RS19755	0.46	+1.1
2,222,876	+		BBR_RS19755	0.46	-1.2
2,222,878	-		BBR_RS19755	0.46	-1.4
2,222,895	-		BBR_RS19755	0.47	-0.6
2,222,911	+		BBR_RS19755	0.48	-0.3
2,222,949	-		BBR_RS19755	0.50	+2.0
2,222,957	-		BBR_RS19755	0.51	+0.1
2,223,010	-		BBR_RS19755	0.54	-0.5
2,223,010	-		BBR_RS19755	0.54	+0.3
2,223,018	-		BBR_RS19755	0.55	-1.3
2,223,030	-		BBR_RS19755	0.56	-1.3
2,223,033	+		BBR_RS19755	0.56	+0.7
2,223,033	-		BBR_RS19755	0.56	+0.1
2,223,041	-		BBR_RS19755	0.56	-0.3
2,223,067	-		BBR_RS19755	0.58	+0.2
2,223,074	+		BBR_RS19755	0.59	+1.3
2,223,085	+		BBR_RS19755	0.59	-1.2
2,223,110	-		BBR_RS19755	0.61	+2.6
2,223,122	+		BBR_RS19755	0.62	+1.0
2,223,130	-		BBR_RS19755	0.62	-0.6
2,223,156	-		BBR_RS19755	0.64	+2.0
2,223,197	+		BBR_RS19755	0.67	+0.7
2,223,197	-		BBR_RS19755	0.67	+1.0
2,223,205	+		BBR_RS19755	0.67	+1.2
2,223,214	-		BBR_RS19755	0.68	-1.2
2,223,215	-		BBR_RS19755	0.68	-0.9
2,223,217	+		BBR_RS19755	0.68	+1.0
2,223,217	+		BBR_RS19755	0.68	-0.2
2,223,223	+		BBR_RS19755	0.68	+1.7
2,223,229	+		BBR_RS19755	0.69	+1.1
2,223,229	+		BBR_RS19755	0.69	-1.2
2,223,237	+		BBR_RS19755	0.69	+1.4
2,223,242	+		BBR_RS19755	0.70	+2.0
2,223,244	-		BBR_RS19755	0.70	+1.4
2,223,264	+		BBR_RS19755	0.71	+0.8
2,223,275	-		BBR_RS19755	0.72	-0.6
2,223,275	-		BBR_RS19755	0.72	-2.3
2,223,294	-		BBR_RS19755	0.73	+1.5
2,223,294	-		BBR_RS19755	0.73	+0.7
2,223,300	+		BBR_RS19755	0.73	-0.3
2,223,337	-		BBR_RS19755	0.76	-1.2
2,223,381	-		BBR_RS19755	0.79	+0.7
2,223,391	-		BBR_RS19755	0.79	+0.7
2,223,391	-		BBR_RS19755	0.79	-0.6
2,223,403	+		BBR_RS19755	0.80	+1.8
2,223,406	-		BBR_RS19755	0.80	+0.7
2,223,411	-		BBR_RS19755	0.81	+0.6
2,223,416	-		BBR_RS19755	0.81	+1.4
2,223,463	-		BBR_RS19755	0.84	-0.2
2,223,483	+		BBR_RS19755	0.85	+1.0
2,223,491	-		BBR_RS19755	0.86	-1.3
2,223,491	-		BBR_RS19755	0.86	-0.5
2,223,493	+		BBR_RS19755	0.86	+2.3
2,223,493	-		BBR_RS19755	0.86	-0.9
2,223,541	+		BBR_RS19755	0.89	+1.0
2,223,566	-				-0.7
2,223,570	-				+0.8
2,223,589	+				+2.0
2,223,694	-				-1.7
2,223,703	+				-0.9
2,223,705	-				+1.5
2,223,706	-				-0.1
2,223,718	-				-0.3
2,223,739	-				+1.4
2,223,975	-		BBR_RS19760	0.19	-1.9
2,224,101	-		BBR_RS19760	0.29	+1.0
2,224,140	-		BBR_RS19760	0.32	-0.2
2,224,140	-		BBR_RS19760	0.32	+0.4
2,224,964	-				-2.7
2,224,964	-				+0.2
2,224,964	-				+0.5
2,224,964	-				-1.2
2,224,979	-				-1.2
2,224,984	-				-3.4
2,224,989	-				-0.5
2,225,872	-				-0.5
2,225,895	-				-0.0
2,225,895	-				+1.0
2,225,910	-				+2.0
2,225,910	-				-0.5
2,225,928	-				-1.5
2,225,940	-				+1.2
2,225,940	-				+0.0
2,225,941	-				-0.9
2,225,949	-				-1.5
2,225,951	-				+1.4
2,225,954	-				-0.3
2,225,954	-				-0.5
2,225,963	-				-0.8
2,225,965	-				+1.0
2,225,965	-				+0.4
2,225,970	-				-1.1
2,225,975	-				+0.0
2,225,975	-				-0.7
2,225,975	-				-0.6
2,225,980	-				+1.4
2,225,980	-				+0.7
2,225,980	-				-0.8
2,225,991	-				+0.7