Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19290

Experiment: Recovery broth with Tiamulin 2e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Tiamulin 2e-04 mM
2,104,890	-				+0.4
2,104,890	-				-0.0
2,104,890	-				-0.3
2,104,890	-				+0.2
2,104,890	-				+0.6
2,104,892	-				+0.2
2,104,894	-				+0.5
2,104,894	-				-0.1
2,104,896	-				+0.4
2,104,910	+				-0.1
2,104,910	+				+0.0
2,104,910	+				-0.1
2,104,910	+				-0.3
2,104,910	+				+0.3
2,104,916	+				-0.5
2,104,918	-				-0.1
2,104,918	-				+0.3
2,104,921	+				+0.8
2,104,924	-				+0.2
2,104,924	-				+2.2
2,105,829	+				-0.8
2,105,843	+				-0.0
2,105,849	-				-0.4
2,105,851	+				+0.2
2,105,851	-				+0.1
2,105,873	+				-0.9
2,105,877	+				+0.1
2,105,881	-				+0.6
2,105,883	+				-0.2
2,105,891	-				+0.8
2,105,903	-				+0.0
2,105,905	+				-0.2
2,105,910	+				+0.7
2,105,913	-				-1.3
2,105,913	-				-0.8
2,105,913	-				-0.3
2,105,918	-				-0.6
2,105,918	-				+0.6
2,105,960	+		BBR_RS19290	0.13	-1.0
2,105,960	+		BBR_RS19290	0.13	-0.1
2,105,964	+		BBR_RS19290	0.14	-0.3
2,106,020	+		BBR_RS19290	0.23	-1.1
2,106,025	-		BBR_RS19290	0.24	-0.9
2,106,055	+		BBR_RS19290	0.29	-0.4
2,106,055	+		BBR_RS19290	0.29	+0.6
2,106,058	-		BBR_RS19290	0.30	-0.4
2,106,078	+		BBR_RS19290	0.33	-0.3
2,106,078	+		BBR_RS19290	0.33	+1.0
2,106,078	-		BBR_RS19290	0.33	-0.3
2,106,084	+		BBR_RS19290	0.34	-2.2
2,106,092	-		BBR_RS19290	0.36	+0.4
2,106,092	-		BBR_RS19290	0.36	-0.2
2,106,129	-		BBR_RS19290	0.42	-0.8
2,106,140	-		BBR_RS19290	0.44	-1.5
2,106,156	-		BBR_RS19290	0.47	-0.9
2,106,160	+		BBR_RS19290	0.47	-0.6
2,106,168	-		BBR_RS19290	0.49	-1.4
2,106,289	-		BBR_RS19290	0.69	-1.5
2,106,341	+		BBR_RS19290	0.78	-0.7
2,106,349	-		BBR_RS19290	0.80	-0.5
2,106,349	-		BBR_RS19290	0.80	-0.3
2,106,349	-		BBR_RS19290	0.80	-0.7
2,106,357	-		BBR_RS19290	0.81	-0.8
2,106,382	+		BBR_RS19290	0.85	+1.0
2,106,391	+		BBR_RS19290	0.87	+0.9
2,106,391	+		BBR_RS19290	0.87	-1.1
2,106,404	-		BBR_RS19290	0.89	+0.6
2,106,414	+				+2.0
2,106,422	-				-1.4
2,106,433	-				-1.8
2,106,438	+				+0.3
2,106,438	+				+0.3
2,106,438	+				-0.7
2,106,438	+				-0.8
2,106,438	+				+0.3
2,106,438	+				+0.4
2,106,438	+				-0.6
2,106,438	+				+1.1
2,106,438	-				-0.8
2,106,440	+				-0.2
2,106,446	-				+0.4
2,106,446	-				-1.4
2,106,446	-				-1.7
2,106,446	-				-0.9
2,106,483	-				+0.4
2,106,486	+				-0.3
2,106,494	+				+0.2
2,106,494	-				-0.4
2,106,504	+				-0.5
2,106,504	+				-1.0
2,106,504	+				-0.4
2,106,512	-				+1.3
2,106,512	-				-0.1
2,106,525	+				-0.7
2,106,525	+				-0.3
2,106,525	+				+0.5
2,106,525	+				+1.0
2,106,525	+				-0.1
2,106,572	+				-0.8
2,106,577	+				-0.8
2,106,580	-				-0.5
2,106,588	+				+0.1
2,106,603	+				-1.5
2,106,621	-				+1.9
2,106,674	+				-0.8
2,106,684	+				-0.6
2,106,690	+				-1.1
2,106,713	+				-0.9
2,106,720	+				+0.4
2,106,732	+				+1.2
2,106,742	-				-0.6
2,106,758	-				-0.6
2,106,798	+				+0.2
2,106,798	+				+0.5
2,106,798	+				+0.7
2,106,806	-				-0.6
2,106,820	-				+0.0
2,106,829	+				+0.7
2,106,838	-				-0.1
2,106,841	+				-1.6
2,106,841	+				+0.1
2,106,841	+				-2.0
2,106,841	+				-0.2
2,106,841	+				-0.3
2,106,849	-				+0.7
2,106,849	-				+0.2
2,106,849	-				+1.5
2,106,879	+				+0.6
2,106,879	+				-0.1
2,106,887	-				-0.1
2,106,887	-				+1.1
2,106,890	+				-0.6
2,106,898	-				-0.9
2,106,898	-				-1.1
2,106,903	+				+0.3
2,106,903	+				+0.1
2,106,908	+				-0.1
2,106,912	+				-1.4
2,106,912	+				-0.4
2,106,921	-				-0.4
2,106,926	+				-0.1
2,106,934	-				-0.7
2,106,960	+				-0.8
2,106,965	+				+0.2
2,106,968	-				-0.9
2,106,968	-				+0.3
2,106,970	+				-0.4
2,106,970	+				-0.7
2,106,973	-				-1.1
2,106,974	-				-1.7
2,106,977	+				-0.2
2,106,982	+				-0.1
2,106,992	+				-0.3
2,107,000	-				-2.7
2,107,005	+				-0.2
2,107,005	+				-0.4
2,107,029	-				-0.4
2,107,057	-				+0.7
2,107,104	-		BBR_RS19295	0.12	+0.2
2,107,124	+		BBR_RS19295	0.12	-1.1
2,107,147	+		BBR_RS19295	0.13	-1.1
2,107,149	+		BBR_RS19295	0.13	+0.5
2,107,157	-		BBR_RS19295	0.14	+0.7
2,107,157	-		BBR_RS19295	0.14	+1.4
2,107,157	-		BBR_RS19295	0.14	-0.6
2,107,176	+		BBR_RS19295	0.14	+2.2
2,107,182	+		BBR_RS19295	0.15	+0.5
2,107,182	+		BBR_RS19295	0.15	-1.3
2,107,182	+		BBR_RS19295	0.15	-1.4
2,107,182	+		BBR_RS19295	0.15	-1.2
2,107,184	+		BBR_RS19295	0.15	-1.4
2,107,185	-		BBR_RS19295	0.15	-1.1
2,107,185	-		BBR_RS19295	0.15	-0.6
2,107,190	-		BBR_RS19295	0.15	-0.0
2,107,191	-		BBR_RS19295	0.15	-2.6
2,107,194	-		BBR_RS19295	0.15	+0.1
2,107,249	-		BBR_RS19295	0.17	-1.0
2,107,256	+		BBR_RS19295	0.17	-0.1
2,107,256	+		BBR_RS19295	0.17	-0.0
2,107,266	+		BBR_RS19295	0.18	-0.7
2,107,298	-		BBR_RS19295	0.19	-1.2
2,107,319	+		BBR_RS19295	0.20	-1.3
2,107,323	+		BBR_RS19295	0.20	-2.6
2,107,327	-		BBR_RS19295	0.20	-0.4
2,107,378	-		BBR_RS19295	0.22	-2.0
2,107,417	+		BBR_RS19295	0.24	-1.1
2,107,428	-		BBR_RS19295	0.24	+0.2
2,107,428	-		BBR_RS19295	0.24	-0.1
2,107,434	-		BBR_RS19295	0.24	+1.6