Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18750

Experiment: Recovery broth with Tiamulin 2e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Tiamulin 2e-04 mM
1,996,849	-		BBR_RS18745	0.46	-0.0
1,996,870	-		BBR_RS18745	0.48	-2.0
1,997,528	-				-0.4
1,997,542	-				-1.0
1,997,542	-				-0.5
1,997,542	-				-0.4
1,997,585	-				-0.3
1,997,585	-				+0.5
1,997,585	-				+0.4
1,997,657	-		BBR_RS18750	0.13	+0.3
1,997,706	+		BBR_RS18750	0.17	-0.6
1,997,714	-		BBR_RS18750	0.18	-0.4
1,997,722	-		BBR_RS18750	0.18	-0.5
1,997,763	+		BBR_RS18750	0.22	-0.8
1,997,763	-		BBR_RS18750	0.22	-1.6
1,997,771	-		BBR_RS18750	0.23	-1.2
1,997,785	+		BBR_RS18750	0.24	-0.5
1,997,785	-		BBR_RS18750	0.24	-0.8
1,997,793	-		BBR_RS18750	0.25	+0.8
1,997,793	-		BBR_RS18750	0.25	-0.4
1,997,793	-		BBR_RS18750	0.25	-2.1
1,997,837	+		BBR_RS18750	0.28	-1.1
1,997,845	-		BBR_RS18750	0.29	-2.3
1,997,850	+		BBR_RS18750	0.30	-1.4
1,997,850	+		BBR_RS18750	0.30	-1.9
1,997,852	+		BBR_RS18750	0.30	-0.4
1,997,857	+		BBR_RS18750	0.30	+0.7
1,997,857	+		BBR_RS18750	0.30	-0.3
1,997,858	-		BBR_RS18750	0.30	+0.7
1,997,882	+		BBR_RS18750	0.32	+0.6
1,997,882	+		BBR_RS18750	0.32	+0.3
1,997,882	+		BBR_RS18750	0.32	+1.1
1,997,890	-		BBR_RS18750	0.33	-0.6
1,997,894	-		BBR_RS18750	0.33	-1.7
1,997,923	+		BBR_RS18750	0.36	-0.7
1,997,928	+		BBR_RS18750	0.36	-0.0
1,997,928	-		BBR_RS18750	0.36	-0.8
1,997,938	+		BBR_RS18750	0.37	-1.5
1,997,955	-		BBR_RS18750	0.39	-0.1
1,997,955	-		BBR_RS18750	0.39	-1.5
1,997,971	-		BBR_RS18750	0.40	-1.0
1,998,001	+		BBR_RS18750	0.43	-0.6
1,998,025	+		BBR_RS18750	0.45	-0.2
1,998,038	+		BBR_RS18750	0.46	+0.1
1,998,038	+		BBR_RS18750	0.46	-0.0
1,998,077	+		BBR_RS18750	0.49	+1.2
1,998,085	-		BBR_RS18750	0.50	-0.7
1,998,085	-		BBR_RS18750	0.50	-0.7
1,998,107	-		BBR_RS18750	0.52	+0.6
1,998,152	+		BBR_RS18750	0.56	+0.4
1,998,153	+		BBR_RS18750	0.56	-0.9
1,998,160	+		BBR_RS18750	0.56	-0.3
1,998,160	-		BBR_RS18750	0.56	-0.7
1,998,165	+		BBR_RS18750	0.57	+0.1
1,998,168	-		BBR_RS18750	0.57	-1.3
1,998,168	-		BBR_RS18750	0.57	+0.7
1,998,251	-		BBR_RS18750	0.64	+0.1
1,998,266	+		BBR_RS18750	0.66	-1.3
1,998,274	-		BBR_RS18750	0.66	-1.0
1,998,286	-		BBR_RS18750	0.67	-2.0
1,998,299	-		BBR_RS18750	0.68	-1.2
1,998,343	-		BBR_RS18750	0.72	+0.0
1,998,343	-		BBR_RS18750	0.72	+0.7
1,998,343	-		BBR_RS18750	0.72	-0.6
1,998,365	-		BBR_RS18750	0.74	-0.8
1,998,365	-		BBR_RS18750	0.74	-2.7
1,998,384	-		BBR_RS18750	0.76	-2.1
1,998,422	-		BBR_RS18750	0.79	+0.4
1,998,432	-		BBR_RS18750	0.80	-3.5
1,998,432	-		BBR_RS18750	0.80	-0.2
1,998,437	-		BBR_RS18750	0.80	+1.2
1,998,457	-		BBR_RS18750	0.82	+1.0
1,998,463	-		BBR_RS18750	0.83	-0.7
1,998,468	-		BBR_RS18750	0.83	-1.9
1,998,476	+		BBR_RS18750	0.84	-0.8
1,998,488	+		BBR_RS18750	0.85	-1.3
1,998,519	-		BBR_RS18750	0.87	+0.1
1,998,542	-		BBR_RS18750	0.89	-1.6
1,998,629	+				-1.1
1,998,651	-				-1.4
1,998,661	+				-0.3
1,998,671	+				-0.4
1,998,706	-				-0.1
1,998,714	+				-0.3
1,998,715	+				-0.9
1,998,722	-				+0.9
1,998,722	-				-0.3
1,998,722	-				-0.2
1,998,723	-				+0.1
1,998,723	-				-0.6
1,998,780	-				+0.8
1,998,780	-				-0.3
1,998,782	-				+0.7
1,998,784	+				-1.1
1,998,825	-		BBR_RS18755	0.14	+1.4
1,998,826	-		BBR_RS18755	0.14	+1.0
1,998,846	-		BBR_RS18755	0.19	+0.0
1,999,301	-				-0.0
1,999,308	-				-0.1
1,999,316	-				-0.1
1,999,321	-				+0.7
1,999,321	-				+1.0
1,999,321	-				-0.8
1,999,323	-				+0.5
1,999,335	+				+1.0
1,999,336	-				+0.3
1,999,343	-				-0.5
1,999,343	-				-1.0
1,999,343	-				-1.6
1,999,345	-				+0.1
1,999,455	+				+2.0
1,999,467	-				-2.0
1,999,471	-				+0.4
1,999,498	-				-0.2
1,999,504	-				-1.9
1,999,518	-				-0.7