Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17375

Experiment: Recovery broth with Tiamulin 2e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Tiamulin 2e-04 mM
1,675,018	+		BBR_RS17365	0.83	+1.0
1,675,035	+		BBR_RS17365	0.86	-1.3
1,675,040	+		BBR_RS17365	0.87	-1.8
1,675,050	+		BBR_RS17365	0.88	-2.0
1,675,063	+				-0.3
1,675,063	+				-0.4
1,675,073	+				-1.2
1,675,090	-				-2.1
1,675,100	-				-1.3
1,675,109	-				+0.2
1,675,127	+				+0.7
1,675,146	+				-1.3
1,675,146	+				-1.0
1,675,169	-				-0.6
1,675,173	+				-0.1
1,675,178	+				-0.3
1,675,181	-				+1.7
1,675,186	-				-0.3
1,675,201	-				-0.4
1,675,214	+		BBR_RS17370	0.10	+1.3
1,675,229	-		BBR_RS17370	0.12	-0.0
1,675,229	-		BBR_RS17370	0.12	-0.6
1,675,243	+		BBR_RS17370	0.14	-1.2
1,675,243	+		BBR_RS17370	0.14	-1.0
1,675,278	-		BBR_RS17370	0.18	+0.2
1,675,280	+		BBR_RS17370	0.18	-0.1
1,675,315	-		BBR_RS17370	0.22	-1.0
1,675,337	+		BBR_RS17370	0.25	-0.8
1,675,345	-		BBR_RS17370	0.26	+0.3
1,675,345	-		BBR_RS17370	0.26	-2.3
1,675,345	-		BBR_RS17370	0.26	-0.2
1,675,345	-		BBR_RS17370	0.26	-3.0
1,675,346	-		BBR_RS17370	0.26	+0.0
1,675,363	+		BBR_RS17370	0.28	-0.5
1,675,371	-		BBR_RS17370	0.29	-1.0
1,675,377	+		BBR_RS17370	0.30	-1.2
1,675,381	-		BBR_RS17370	0.30	-1.2
1,675,408	-		BBR_RS17370	0.33	-1.6
1,675,429	+		BBR_RS17370	0.36	+0.3
1,675,553	-		BBR_RS17370	0.50	-0.3
1,675,583	+		BBR_RS17370	0.54	+1.6
1,675,614	-		BBR_RS17370	0.58	-1.1
1,675,614	-		BBR_RS17370	0.58	-1.1
1,675,692	-		BBR_RS17370	0.67	-1.2
1,675,692	-		BBR_RS17370	0.67	-0.8
1,675,787	-		BBR_RS17370	0.78	-0.4
1,675,831	-		BBR_RS17370	0.84	-1.6
1,675,895	+				-1.3
1,675,895	+				-0.8
1,675,898	+				-1.1
1,675,898	+				-0.1
1,675,905	+				-2.1
1,675,906	-				-1.7
1,675,931	+				-0.3
1,675,952	-				+0.0
1,675,988	+				-0.9
1,676,017	-				-1.5
1,676,057	+				-0.0
1,676,065	-				-1.6
1,676,119	-		BBR_RS17375	0.16	-2.5
1,676,142	+		BBR_RS17375	0.18	+0.3
1,676,225	-		BBR_RS17375	0.28	-0.8
1,676,240	+		BBR_RS17375	0.30	-0.8
1,676,246	+		BBR_RS17375	0.31	-0.6
1,676,246	+		BBR_RS17375	0.31	-0.9
1,676,248	-		BBR_RS17375	0.31	-0.3
1,676,248	-		BBR_RS17375	0.31	-0.5
1,676,272	+		BBR_RS17375	0.34	-0.7
1,676,386	-		BBR_RS17375	0.47	-0.0
1,676,386	-		BBR_RS17375	0.47	-0.8
1,676,472	-		BBR_RS17375	0.58	-1.0
1,676,489	-		BBR_RS17375	0.60	-1.9
1,676,503	+		BBR_RS17375	0.61	-0.2
1,676,503	+		BBR_RS17375	0.61	-0.1
1,676,511	-		BBR_RS17375	0.62	-1.7
1,676,515	+		BBR_RS17375	0.63	+1.3
1,676,525	+		BBR_RS17375	0.64	-1.4
1,676,615	+		BBR_RS17375	0.74	-0.8
1,676,662	+		BBR_RS17375	0.80	-2.0
1,676,704	-		BBR_RS17375	0.85	-0.9
1,676,722	+		BBR_RS17375	0.87	-1.4
1,676,760	-				-1.4
1,676,768	+				-2.2
1,676,853	-				+0.3
1,676,853	-				-0.4
1,676,867	+				-0.7
1,676,892	+				+0.9
1,676,938	+		BBR_RS17380	0.10	-0.4
1,677,007	+		BBR_RS17380	0.23	+0.3
1,677,078	+		BBR_RS17380	0.36	-0.1
1,677,078	+		BBR_RS17380	0.36	-0.2
1,677,094	-		BBR_RS17380	0.38	+0.1
1,677,094	-		BBR_RS17380	0.38	-0.1
1,677,096	-		BBR_RS17380	0.39	+0.6
1,677,119	-		BBR_RS17380	0.43	+0.4
1,677,127	+		BBR_RS17380	0.44	-0.0
1,677,135	-		BBR_RS17380	0.46	+1.0
1,677,135	-		BBR_RS17380	0.46	+1.3
1,677,137	+		BBR_RS17380	0.46	-0.3
1,677,145	-		BBR_RS17380	0.48	-0.8
1,677,160	-		BBR_RS17380	0.50	-2.3
1,677,175	-		BBR_RS17380	0.53	-0.1
1,677,197	+		BBR_RS17380	0.57	+0.4
1,677,197	+		BBR_RS17380	0.57	-0.4
1,677,223	-		BBR_RS17380	0.62	+0.8
1,677,241	-		BBR_RS17380	0.65	-0.5
1,677,254	-		BBR_RS17380	0.67	+0.0
1,677,281	+		BBR_RS17380	0.72	+0.6
1,677,289	-		BBR_RS17380	0.74	+1.5
1,677,289	-		BBR_RS17380	0.74	-0.3
1,677,289	-		BBR_RS17380	0.74	-0.3
1,677,346	+		BBR_RS17380	0.84	+2.2
1,677,354	-		BBR_RS17380	0.86	+0.5
1,677,360	+		BBR_RS17380	0.87	-0.1
1,677,371	-		BBR_RS17380	0.89	+0.6
1,677,384	+				-0.7
1,677,392	-				+0.1
1,677,392	-				-1.7
1,677,392	-				-0.4
1,677,397	-				-0.2
1,677,489	-				-0.4
1,677,490	+				+0.4
1,677,498	-				+0.0
1,677,498	-				-0.1
1,677,595	+				+0.4