Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17370

Experiment: Recovery broth with Tiamulin 2e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Tiamulin 2e-04 mM
1,674,141	-		BBR_RS17360	0.72	+0.4
1,674,145	+		BBR_RS17360	0.73	-1.0
1,674,145	+		BBR_RS17360	0.73	-0.7
1,674,169	-		BBR_RS17360	0.75	+0.2
1,674,181	+		BBR_RS17360	0.76	-0.3
1,674,189	-		BBR_RS17360	0.77	+0.2
1,674,214	-		BBR_RS17360	0.79	-0.2
1,674,242	-		BBR_RS17360	0.81	-1.8
1,674,242	-		BBR_RS17360	0.81	-0.9
1,674,255	+		BBR_RS17360	0.83	-0.3
1,674,265	-		BBR_RS17360	0.83	-0.2
1,674,270	+		BBR_RS17360	0.84	-0.7
1,674,278	+		BBR_RS17360	0.85	-1.9
1,674,313	-		BBR_RS17360	0.88	-0.2
1,674,344	-				-0.8
1,674,344	-				+0.9
1,674,360	-				-0.7
1,674,380	+				-0.5
1,674,396	+				-2.3
1,674,396	+				+0.5
1,674,420	-				-0.4
1,674,455	+				-0.7
1,674,455	+				-0.6
1,674,465	-				-0.9
1,674,465	-				-1.1
1,674,509	+				-0.6
1,674,553	-		BBR_RS17365	0.15	-1.6
1,674,633	+		BBR_RS17365	0.27	-0.7
1,674,668	-		BBR_RS17365	0.32	-0.1
1,674,738	-		BBR_RS17365	0.42	+0.2
1,674,753	+		BBR_RS17365	0.44	+0.1
1,674,753	+		BBR_RS17365	0.44	-0.8
1,674,761	-		BBR_RS17365	0.46	+1.6
1,674,816	+		BBR_RS17365	0.54	-2.5
1,674,816	+		BBR_RS17365	0.54	-2.8
1,674,828	-		BBR_RS17365	0.55	-1.1
1,674,945	+		BBR_RS17365	0.73	+2.2
1,674,963	-		BBR_RS17365	0.75	-0.3
1,674,973	-		BBR_RS17365	0.77	-0.2
1,674,986	-		BBR_RS17365	0.79	-0.2
1,675,018	+		BBR_RS17365	0.83	+1.0
1,675,035	+		BBR_RS17365	0.86	-1.3
1,675,040	+		BBR_RS17365	0.87	-1.8
1,675,050	+		BBR_RS17365	0.88	-2.0
1,675,063	+				-0.3
1,675,063	+				-0.4
1,675,073	+				-1.2
1,675,090	-				-2.1
1,675,100	-				-1.3
1,675,109	-				+0.2
1,675,127	+				+0.7
1,675,146	+				-1.3
1,675,146	+				-1.0
1,675,169	-				-0.6
1,675,173	+				-0.1
1,675,178	+				-0.3
1,675,181	-				+1.7
1,675,186	-				-0.3
1,675,201	-				-0.4
1,675,214	+		BBR_RS17370	0.10	+1.3
1,675,229	-		BBR_RS17370	0.12	-0.0
1,675,229	-		BBR_RS17370	0.12	-0.6
1,675,243	+		BBR_RS17370	0.14	-1.2
1,675,243	+		BBR_RS17370	0.14	-1.0
1,675,278	-		BBR_RS17370	0.18	+0.2
1,675,280	+		BBR_RS17370	0.18	-0.1
1,675,315	-		BBR_RS17370	0.22	-1.0
1,675,337	+		BBR_RS17370	0.25	-0.8
1,675,345	-		BBR_RS17370	0.26	+0.3
1,675,345	-		BBR_RS17370	0.26	-2.3
1,675,345	-		BBR_RS17370	0.26	-0.2
1,675,345	-		BBR_RS17370	0.26	-3.0
1,675,346	-		BBR_RS17370	0.26	+0.0
1,675,363	+		BBR_RS17370	0.28	-0.5
1,675,371	-		BBR_RS17370	0.29	-1.0
1,675,377	+		BBR_RS17370	0.30	-1.2
1,675,381	-		BBR_RS17370	0.30	-1.2
1,675,408	-		BBR_RS17370	0.33	-1.6
1,675,429	+		BBR_RS17370	0.36	+0.3
1,675,553	-		BBR_RS17370	0.50	-0.3
1,675,583	+		BBR_RS17370	0.54	+1.6
1,675,614	-		BBR_RS17370	0.58	-1.1
1,675,614	-		BBR_RS17370	0.58	-1.1
1,675,692	-		BBR_RS17370	0.67	-1.2
1,675,692	-		BBR_RS17370	0.67	-0.8
1,675,787	-		BBR_RS17370	0.78	-0.4
1,675,831	-		BBR_RS17370	0.84	-1.6
1,675,895	+				-1.3
1,675,895	+				-0.8
1,675,898	+				-1.1
1,675,898	+				-0.1
1,675,905	+				-2.1
1,675,906	-				-1.7
1,675,931	+				-0.3
1,675,952	-				+0.0
1,675,988	+				-0.9
1,676,017	-				-1.5
1,676,057	+				-0.0
1,676,065	-				-1.6
1,676,119	-		BBR_RS17375	0.16	-2.5
1,676,142	+		BBR_RS17375	0.18	+0.3
1,676,225	-		BBR_RS17375	0.28	-0.8
1,676,240	+		BBR_RS17375	0.30	-0.8
1,676,246	+		BBR_RS17375	0.31	-0.6
1,676,246	+		BBR_RS17375	0.31	-0.9
1,676,248	-		BBR_RS17375	0.31	-0.3
1,676,248	-		BBR_RS17375	0.31	-0.5
1,676,272	+		BBR_RS17375	0.34	-0.7
1,676,386	-		BBR_RS17375	0.47	-0.0
1,676,386	-		BBR_RS17375	0.47	-0.8
1,676,472	-		BBR_RS17375	0.58	-1.0
1,676,489	-		BBR_RS17375	0.60	-1.9
1,676,503	+		BBR_RS17375	0.61	-0.2
1,676,503	+		BBR_RS17375	0.61	-0.1
1,676,511	-		BBR_RS17375	0.62	-1.7
1,676,515	+		BBR_RS17375	0.63	+1.3
1,676,525	+		BBR_RS17375	0.64	-1.4
1,676,615	+		BBR_RS17375	0.74	-0.8
1,676,662	+		BBR_RS17375	0.80	-2.0
1,676,704	-		BBR_RS17375	0.85	-0.9
1,676,722	+		BBR_RS17375	0.87	-1.4
1,676,760	-				-1.4
1,676,768	+				-2.2
1,676,853	-				+0.3
1,676,853	-				-0.4
1,676,867	+				-0.7
1,676,892	+				+0.9
1,676,938	+		BBR_RS17380	0.10	-0.4