Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16960

Experiment: Recovery broth with Tiamulin 2e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Tiamulin 2e-04 mM
1,576,519	-		BBR_RS16955	0.19	-0.4
1,576,640	-		BBR_RS16955	0.30	-2.5
1,576,682	-		BBR_RS16955	0.34	-2.2
1,577,053	-		BBR_RS16955	0.69	+0.3
1,577,161	-		BBR_RS16955	0.80	-0.8
1,577,169	-		BBR_RS16955	0.80	-0.4
1,577,284	-				-1.0
1,577,338	-				-2.0
1,577,349	-				-0.4
1,577,372	+				+0.7
1,577,429	-		BBR_RS16960	0.11	-0.4
1,577,477	+		BBR_RS16960	0.20	-1.5
1,577,494	-		BBR_RS16960	0.23	-0.1
1,577,705	-		BBR_RS16960	0.63	-1.2
1,577,914	-				-1.5
1,577,986	-				-0.1
1,578,114	+				+0.2
1,578,119	+				-0.4
1,578,143	-				+1.3
1,578,152	+				+0.6
1,578,160	-				+0.6
1,578,179	+				-0.4
1,578,199	+				+1.3
1,578,209	+				-0.6
1,578,227	+				-0.6
1,578,227	+				+0.8
1,578,228	+				+2.6
1,578,836	-		BBR_RS16965	0.27	+2.6
1,578,847	-		BBR_RS16965	0.27	+2.6