Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16870

Experiment: Recovery broth with Tiamulin 2e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Tiamulin 2e-04 mM
1,556,087	-		BBR_RS16865	0.21	+0.2
1,556,092	+		BBR_RS16865	0.21	+1.6
1,556,112	-		BBR_RS16865	0.24	-0.5
1,556,157	+		BBR_RS16865	0.29	+0.7
1,556,165	-		BBR_RS16865	0.30	+0.7
1,556,165	-		BBR_RS16865	0.30	-0.0
1,556,165	-		BBR_RS16865	0.30	-0.5
1,556,165	-		BBR_RS16865	0.30	+1.4
1,556,171	+		BBR_RS16865	0.31	-0.8
1,556,171	+		BBR_RS16865	0.31	+0.1
1,556,188	-		BBR_RS16865	0.33	-0.2
1,556,189	-		BBR_RS16865	0.33	+0.3
1,556,189	-		BBR_RS16865	0.33	-0.1
1,556,221	+		BBR_RS16865	0.37	-0.4
1,556,221	+		BBR_RS16865	0.37	+0.2
1,556,245	-		BBR_RS16865	0.40	+0.2
1,556,259	+		BBR_RS16865	0.42	+0.9
1,556,282	-		BBR_RS16865	0.45	-1.6
1,556,353	+		BBR_RS16865	0.54	+1.3
1,556,353	+		BBR_RS16865	0.54	-0.2
1,556,353	+		BBR_RS16865	0.54	-0.1
1,556,361	-		BBR_RS16865	0.54	+2.3
1,556,361	-		BBR_RS16865	0.54	-0.5
1,556,442	+		BBR_RS16865	0.64	+0.9
1,556,450	-		BBR_RS16865	0.65	-1.8
1,556,450	-		BBR_RS16865	0.65	-1.5
1,556,456	-		BBR_RS16865	0.66	+0.8
1,556,464	-		BBR_RS16865	0.67	+0.1
1,556,466	+		BBR_RS16865	0.67	+1.2
1,556,471	-		BBR_RS16865	0.68	+0.1
1,556,493	+		BBR_RS16865	0.71	+0.9
1,556,506	-		BBR_RS16865	0.72	+0.5
1,556,506	-		BBR_RS16865	0.72	-0.3
1,556,555	-		BBR_RS16865	0.78	+0.4
1,556,587	-		BBR_RS16865	0.82	+0.9
1,556,618	-		BBR_RS16865	0.86	+1.6
1,556,619	-		BBR_RS16865	0.86	+0.2
1,556,629	+		BBR_RS16865	0.87	-0.4
1,556,631	-		BBR_RS16865	0.88	+0.3
1,556,637	-		BBR_RS16865	0.88	-1.0
1,556,637	-		BBR_RS16865	0.88	-0.6
1,556,775	+				+0.5
1,556,803	-				+0.6
1,556,828	+				-1.3
1,556,837	+				-0.1
1,556,932	+				-0.1
1,557,117	-				+1.2
1,557,183	+		BBR_RS16870	0.10	-0.8
1,557,191	-		BBR_RS16870	0.11	-0.1
1,557,209	+		BBR_RS16870	0.13	+0.0
1,557,209	+		BBR_RS16870	0.13	-0.8
1,557,222	-		BBR_RS16870	0.14	-0.4
1,557,233	+		BBR_RS16870	0.15	+0.1
1,557,273	-		BBR_RS16870	0.18	-1.2
1,557,346	-		BBR_RS16870	0.25	-2.2
1,557,379	+		BBR_RS16870	0.28	-0.5
1,557,418	+		BBR_RS16870	0.31	-1.7
1,557,537	+		BBR_RS16870	0.42	+0.7
1,557,617	-		BBR_RS16870	0.49	-0.8
1,557,702	-		BBR_RS16870	0.56	+1.0
1,557,726	+		BBR_RS16870	0.59	+0.4
1,557,818	-		BBR_RS16870	0.67	+0.0
1,557,930	+		BBR_RS16870	0.77	+0.4
1,557,930	+		BBR_RS16870	0.77	-1.3
1,557,957	-		BBR_RS16870	0.79	+0.6
1,557,966	+		BBR_RS16870	0.80	+0.8
1,557,993	-		BBR_RS16870	0.82	-0.2
1,557,998	+		BBR_RS16870	0.83	-1.6
1,557,998	+		BBR_RS16870	0.83	-0.4
1,558,057	+		BBR_RS16870	0.88	-0.8
1,558,057	+		BBR_RS16870	0.88	-0.7
1,558,057	+		BBR_RS16870	0.88	-2.0
1,558,062	+		BBR_RS16870	0.88	+0.4
1,558,065	-		BBR_RS16870	0.89	-1.6
1,558,065	-		BBR_RS16870	0.89	-2.1
1,558,092	-				+0.5
1,558,134	+				-0.7
1,558,142	-				+1.6
1,558,217	+				-0.6
1,558,219	+				-1.5
1,558,226	+				+0.9
1,558,230	+				-1.0
1,558,233	-				+0.5
1,558,234	-				+0.2
1,558,294	-				-0.2
1,558,310	-				+1.6
1,558,330	+		BBR_RS16875	0.12	+0.2
1,558,335	+		BBR_RS16875	0.13	-0.6
1,558,343	-		BBR_RS16875	0.14	-0.7
1,558,370	+		BBR_RS16875	0.17	+0.3
1,558,378	-		BBR_RS16875	0.17	-1.2
1,558,423	-		BBR_RS16875	0.22	+0.7
1,558,423	-		BBR_RS16875	0.22	+0.1
1,558,448	+		BBR_RS16875	0.25	-0.1
1,558,478	+		BBR_RS16875	0.28	-0.3
1,558,478	+		BBR_RS16875	0.28	-0.6
1,558,539	+		BBR_RS16875	0.35	+0.4
1,558,539	+		BBR_RS16875	0.35	-2.5
1,558,539	+		BBR_RS16875	0.35	-1.8
1,558,583	+		BBR_RS16875	0.40	+1.7
1,558,583	+		BBR_RS16875	0.40	-0.5
1,558,591	-		BBR_RS16875	0.41	-0.7
1,558,593	-		BBR_RS16875	0.41	+0.5
1,558,593	-		BBR_RS16875	0.41	-0.4
1,558,593	-		BBR_RS16875	0.41	-0.1
1,558,629	+		BBR_RS16875	0.45	-0.3
1,558,657	+		BBR_RS16875	0.48	+2.6
1,558,660	-		BBR_RS16875	0.48	+0.1
1,558,669	-		BBR_RS16875	0.49	+0.0
1,558,672	-		BBR_RS16875	0.50	+0.6
1,558,676	+		BBR_RS16875	0.50	-0.4
1,558,689	-		BBR_RS16875	0.51	-0.5
1,558,693	+		BBR_RS16875	0.52	+1.0
1,558,693	+		BBR_RS16875	0.52	+0.6
1,558,702	-		BBR_RS16875	0.53	+0.5
1,558,757	+		BBR_RS16875	0.59	-1.1
1,558,762	-		BBR_RS16875	0.59	-0.3
1,558,764	+		BBR_RS16875	0.60	-0.5
1,558,775	-		BBR_RS16875	0.61	-0.6
1,558,777	-		BBR_RS16875	0.61	+0.4
1,558,836	+		BBR_RS16875	0.67	+0.7
1,558,901	+		BBR_RS16875	0.75	+0.2
1,558,944	+		BBR_RS16875	0.79	+0.4
1,558,995	-		BBR_RS16875	0.85	-0.7
1,559,035	+		BBR_RS16875	0.89	+1.9
1,559,043	-				-0.7
1,559,043	-				-1.2
1,559,043	-				+0.3
1,559,054	+				+0.2
1,559,137	-				-0.0