Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16750

Experiment: Recovery broth with Tiamulin 2e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Tiamulin 2e-04 mM
1,529,050	-		BBR_RS16740	0.81	-0.5
1,529,050	-		BBR_RS16740	0.81	+0.9
1,529,095	+		BBR_RS16740	0.88	+1.7
1,529,108	-		BBR_RS16740	0.90	-0.5
1,529,129	+				+0.1
1,529,129	+				+0.2
1,529,139	-				-1.2
1,529,326	+		BBR_RS16745	0.16	+0.3
1,529,326	+		BBR_RS16745	0.16	-0.3
1,529,334	-		BBR_RS16745	0.17	-0.1
1,529,334	-		BBR_RS16745	0.17	-0.1
1,529,334	-		BBR_RS16745	0.17	-0.9
1,529,378	+		BBR_RS16745	0.22	+0.6
1,529,386	-		BBR_RS16745	0.23	+0.6
1,529,433	-		BBR_RS16745	0.29	+0.7
1,529,556	-		BBR_RS16745	0.43	-0.5
1,529,574	-		BBR_RS16745	0.45	-0.6
1,529,594	+		BBR_RS16745	0.47	+1.0
1,529,597	-		BBR_RS16745	0.48	-0.5
1,529,679	+		BBR_RS16745	0.57	-1.1
1,529,708	-		BBR_RS16745	0.61	-0.6
1,529,731	-		BBR_RS16745	0.63	-1.3
1,529,831	-		BBR_RS16745	0.75	-0.9
1,529,954	+		BBR_RS16745	0.90	-0.6
1,529,954	+		BBR_RS16745	0.90	-0.6
1,529,954	+		BBR_RS16745	0.90	-0.3
1,529,962	-				+0.1
1,529,962	-				-0.1
1,529,962	-				-0.2
1,529,991	+				-1.5
1,530,010	+				-1.2
1,530,300	+		BBR_RS16750	0.31	+0.3
1,530,322	+		BBR_RS16750	0.33	+1.0
1,530,339	-		BBR_RS16750	0.35	-1.1
1,530,339	-		BBR_RS16750	0.35	-0.4
1,530,355	+		BBR_RS16750	0.37	-0.0
1,530,374	+		BBR_RS16750	0.40	+1.0
1,530,382	-		BBR_RS16750	0.41	+0.3
1,530,478	-		BBR_RS16750	0.52	+2.6
1,530,478	-		BBR_RS16750	0.52	+0.6
1,530,506	-		BBR_RS16750	0.55	-1.2
1,530,676	-		BBR_RS16750	0.76	-0.4
1,530,745	+		BBR_RS16750	0.84	+0.6
1,530,767	+		BBR_RS16750	0.86	-0.0
1,530,783	+		BBR_RS16750	0.88	-0.6
1,530,853	-				+2.6
1,530,989	+				-2.1
1,530,989	+				+0.4
1,531,026	+				-0.0
1,531,034	-				-0.1
1,531,039	-				+0.1
1,531,073	-				+0.2
1,531,074	-				+0.5
1,531,074	-				+0.4
1,531,110	-				+0.3
1,531,110	-				+0.6
1,531,166	+				+0.7
1,531,181	+				-1.1
1,531,206	-		BBR_RS16755	0.11	-0.0
1,531,217	+		BBR_RS16755	0.12	+0.7
1,531,217	-		BBR_RS16755	0.12	+0.6
1,531,225	-		BBR_RS16755	0.13	-2.3
1,531,227	-		BBR_RS16755	0.13	-1.0
1,531,269	+		BBR_RS16755	0.18	-0.2
1,531,349	-		BBR_RS16755	0.26	-1.9
1,531,431	-		BBR_RS16755	0.35	-1.4
1,531,444	+		BBR_RS16755	0.36	+0.6
1,531,479	+		BBR_RS16755	0.40	-0.6
1,531,484	+		BBR_RS16755	0.41	-0.2
1,531,499	+		BBR_RS16755	0.42	+0.3
1,531,507	-		BBR_RS16755	0.43	+0.2
1,531,520	+		BBR_RS16755	0.45	-0.5
1,531,615	-		BBR_RS16755	0.55	-0.7
1,531,687	+		BBR_RS16755	0.63	+1.6
1,531,704	-		BBR_RS16755	0.64	-0.4
1,531,847	+		BBR_RS16755	0.80	-0.0