Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16640

Experiment: Recovery broth with Tiamulin 2e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Tiamulin 2e-04 mM
1,501,919	-		BBR_RS16635	0.63	-1.8
1,501,984	-		BBR_RS16635	0.66	-0.6
1,502,285	-		BBR_RS16635	0.81	-0.6
1,502,464	-		BBR_RS16635	0.90	+0.2
1,502,678	+				-1.0
1,502,689	-				-0.3
1,502,719	-				+0.2
1,502,774	-				+0.2
1,502,795	-		BBR_RS16640	0.10	+1.5
1,502,903	+		BBR_RS16640	0.21	-0.0
1,502,911	-		BBR_RS16640	0.22	-1.2
1,502,953	-		BBR_RS16640	0.26	+1.5
1,503,206	-		BBR_RS16640	0.51	+0.5
1,503,534	-		BBR_RS16640	0.84	-2.9
1,503,672	+				+1.0
1,503,721	-				-0.7
1,503,721	-				-1.4
1,503,725	-				-1.5
1,503,929	-		BBR_RS16645	0.23	+1.5
1,504,675	+				+0.6