Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16610

Experiment: Recovery broth with Tiamulin 2e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Tiamulin 2e-04 mM
1,494,931	-		BBR_RS16605	0.66	+0.8
1,494,980	+		BBR_RS16605	0.68	+1.0
1,495,099	-		BBR_RS16605	0.72	+1.2
1,495,120	+		BBR_RS16605	0.73	+1.5
1,495,126	-		BBR_RS16605	0.73	+0.2
1,495,126	-		BBR_RS16605	0.73	+0.8
1,495,150	-		BBR_RS16605	0.74	+0.5
1,495,158	-		BBR_RS16605	0.75	+0.3
1,495,168	+		BBR_RS16605	0.75	-0.9
1,495,177	-		BBR_RS16605	0.75	+0.6
1,495,202	+		BBR_RS16605	0.76	+0.8
1,495,210	-		BBR_RS16605	0.77	-0.1
1,495,244	+		BBR_RS16605	0.78	+0.8
1,495,250	+		BBR_RS16605	0.78	+0.4
1,495,258	-		BBR_RS16605	0.79	+1.2
1,495,370	+		BBR_RS16605	0.83	+1.0
1,495,383	-		BBR_RS16605	0.83	+1.3
1,495,384	-		BBR_RS16605	0.83	+1.4
1,495,517	+		BBR_RS16605	0.88	-0.1
1,495,538	+		BBR_RS16605	0.89	+0.8
1,495,538	+		BBR_RS16605	0.89	+0.2
1,495,538	+		BBR_RS16605	0.89	-1.2
1,495,546	-		BBR_RS16605	0.90	+0.6
1,495,660	-				-0.3
1,495,687	+				-1.5
1,495,704	+				+1.5
1,495,772	-				+0.2
1,495,816	+				+0.6
1,495,819	-				-0.9
1,495,910	+				-0.5
1,495,910	+				-0.2
1,495,962	+		BBR_RS16610	0.14	-1.1
1,496,003	+		BBR_RS16610	0.21	-0.2
1,496,009	-		BBR_RS16610	0.22	+1.2
1,496,023	-		BBR_RS16610	0.24	-0.5
1,496,053	-		BBR_RS16610	0.29	+1.1
1,496,075	+		BBR_RS16610	0.33	-0.3
1,496,086	+		BBR_RS16610	0.35	-0.3
1,496,104	-		BBR_RS16610	0.38	-0.4
1,496,235	+		BBR_RS16610	0.60	-2.1
1,496,253	-		BBR_RS16610	0.63	-0.6
1,496,377	-		BBR_RS16610	0.84	-1.1
1,496,412	+				-0.6
1,496,472	-				+0.7
1,496,475	+				-0.3
1,496,561	-				+0.7
1,496,565	+				-1.1
1,496,569	+				-0.1
1,496,623	-		BBR_RS16615	0.11	-0.3
1,496,689	+		BBR_RS16615	0.17	+1.5
1,496,719	+		BBR_RS16615	0.19	-0.8
1,496,719	+		BBR_RS16615	0.19	-0.4
1,496,741	+		BBR_RS16615	0.21	+0.8
1,496,741	+		BBR_RS16615	0.21	-0.9
1,496,741	+		BBR_RS16615	0.21	+0.6
1,496,749	-		BBR_RS16615	0.21	-0.3
1,496,749	-		BBR_RS16615	0.21	-1.0
1,496,759	-		BBR_RS16615	0.22	-0.0
1,496,823	+		BBR_RS16615	0.27	-0.3
1,496,823	+		BBR_RS16615	0.27	+0.8
1,496,850	-		BBR_RS16615	0.29	-0.2
1,496,856	+		BBR_RS16615	0.30	-0.6
1,496,875	-		BBR_RS16615	0.31	-0.3
1,496,917	+		BBR_RS16615	0.35	-1.5
1,496,917	+		BBR_RS16615	0.35	+0.4
1,496,917	+		BBR_RS16615	0.35	+0.5
1,496,936	+		BBR_RS16615	0.36	+3.5
1,496,944	-		BBR_RS16615	0.37	-0.6
1,496,944	-		BBR_RS16615	0.37	+0.4
1,496,969	+		BBR_RS16615	0.39	-0.7
1,497,014	+		BBR_RS16615	0.42	+0.0
1,497,060	+		BBR_RS16615	0.46	-1.0
1,497,075	+		BBR_RS16615	0.47	-0.2
1,497,091	-		BBR_RS16615	0.49	-0.0
1,497,145	+		BBR_RS16615	0.53	-0.6
1,497,155	+		BBR_RS16615	0.54	-0.0
1,497,191	-		BBR_RS16615	0.57	-0.2
1,497,214	-		BBR_RS16615	0.58	-1.1
1,497,264	-		BBR_RS16615	0.62	-0.0
1,497,312	+		BBR_RS16615	0.66	-1.3
1,497,348	-		BBR_RS16615	0.69	-1.9
1,497,412	-		BBR_RS16615	0.74	-0.0