Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16255

Experiment: Recovery broth with Tiamulin 2e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Tiamulin 2e-04 mM
1,392,157	+				-0.8
1,392,182	-				+0.9
1,392,212	-				+0.0
1,392,235	-		BBR_RS16250	0.12	+1.0
1,392,296	+		BBR_RS16250	0.19	+0.5
1,392,307	-		BBR_RS16250	0.20	-0.8
1,392,373	-		BBR_RS16250	0.28	+0.8
1,392,452	+		BBR_RS16250	0.37	+0.4
1,392,581	-		BBR_RS16250	0.51	-1.9
1,392,581	-		BBR_RS16250	0.51	-1.1
1,392,829	-		BBR_RS16250	0.79	+0.3
1,392,903	-		BBR_RS16250	0.88	+2.5
1,392,946	-				+0.2
1,393,030	+				+1.5
1,393,030	+				+1.0
1,393,030	+				+1.1
1,393,030	+				+2.8
1,393,030	+				-0.4
1,393,038	-				-0.3
1,393,038	-				+0.2
1,393,038	-				+0.4
1,393,038	-				-0.7
1,393,038	-				+0.0
1,393,038	-				+0.8
1,393,038	-				+0.1
1,393,038	-				+0.5
1,393,038	-				-0.4
1,393,038	-				-1.3
1,393,038	-				+0.9
1,393,040	-				+1.4
1,393,073	-				+0.7
1,393,113	-				+1.0
1,393,193	-		BBR_RS16255	0.22	-0.3
1,393,209	-		BBR_RS16255	0.25	+1.1
1,393,239	-		BBR_RS16255	0.30	-0.1
1,393,273	-		BBR_RS16255	0.36	+1.9
1,393,388	+		BBR_RS16255	0.57	+0.6
1,393,488	-		BBR_RS16255	0.74	-0.1
1,393,528	-		BBR_RS16255	0.81	-1.3
1,393,538	+		BBR_RS16255	0.83	-0.5
1,393,621	+				+0.1
1,393,629	-				+2.5
1,393,658	-				-0.3
1,393,658	-				+0.0
1,394,590	-				+0.0
1,394,622	-				+0.9
1,394,622	-				+0.4