Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16245

Experiment: Recovery broth with Tiamulin 2e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Tiamulin 2e-04 mM
1,390,527	+				+2.5
1,390,795	+		BBR_RS16240	0.31	+0.3
1,390,886	+		BBR_RS16240	0.40	-0.0
1,390,894	-		BBR_RS16240	0.41	+0.6
1,390,897	+		BBR_RS16240	0.41	+0.1
1,390,971	+		BBR_RS16240	0.48	-0.3
1,391,021	-		BBR_RS16240	0.53	+1.0
1,391,021	-		BBR_RS16240	0.53	-1.0
1,391,021	-		BBR_RS16240	0.53	+1.1
1,391,066	+		BBR_RS16240	0.57	+0.7
1,391,074	-		BBR_RS16240	0.58	+0.7
1,391,087	-		BBR_RS16240	0.59	+0.4
1,391,217	-		BBR_RS16240	0.72	+2.0
1,391,256	+		BBR_RS16240	0.75	+0.3
1,391,264	-		BBR_RS16240	0.76	+0.0
1,391,266	+		BBR_RS16240	0.76	+1.5
1,391,307	-		BBR_RS16240	0.80	+0.4
1,391,394	-		BBR_RS16240	0.89	-1.1
1,391,434	-				-1.1
1,391,488	+				-0.3
1,391,501	-				+0.1
1,391,501	-				-0.3
1,391,548	-				-0.4
1,391,548	-				+0.0
1,391,548	-				-0.1
1,391,649	-		BBR_RS16245	0.23	+0.6
1,391,711	+		BBR_RS16245	0.34	-0.3
1,391,714	-		BBR_RS16245	0.34	+0.3
1,391,782	-		BBR_RS16245	0.46	-1.4
1,391,871	-		BBR_RS16245	0.60	+1.7
1,391,972	-		BBR_RS16245	0.77	-1.2
1,392,038	-		BBR_RS16245	0.88	-1.4
1,392,051	-				+1.7
1,392,157	+				-0.8
1,392,182	-				+0.9
1,392,212	-				+0.0
1,392,235	-		BBR_RS16250	0.12	+1.0
1,392,296	+		BBR_RS16250	0.19	+0.5
1,392,307	-		BBR_RS16250	0.20	-0.8
1,392,373	-		BBR_RS16250	0.28	+0.8
1,392,452	+		BBR_RS16250	0.37	+0.4
1,392,581	-		BBR_RS16250	0.51	-1.9
1,392,581	-		BBR_RS16250	0.51	-1.1
1,392,829	-		BBR_RS16250	0.79	+0.3
1,392,903	-		BBR_RS16250	0.88	+2.5
1,392,946	-				+0.2
1,393,030	+				+1.5
1,393,030	+				+1.0
1,393,030	+				+1.1
1,393,030	+				+2.8
1,393,030	+				-0.4
1,393,038	-				-0.3
1,393,038	-				+0.2
1,393,038	-				+0.4
1,393,038	-				-0.7
1,393,038	-				+0.0
1,393,038	-				+0.8
1,393,038	-				+0.1
1,393,038	-				+0.5
1,393,038	-				-0.4
1,393,038	-				-1.3
1,393,038	-				+0.9
1,393,040	-				+1.4
1,393,073	-				+0.7