Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS15950

Experiment: Recovery broth with Tiamulin 2e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Tiamulin 2e-04 mM
1,336,144	+				-0.8
1,336,193	-				-0.2
1,336,302	-		BBR_RS15945	0.14	-0.1
1,336,413	+		BBR_RS15945	0.29	-0.9
1,336,413	+		BBR_RS15945	0.29	+0.0
1,336,413	+		BBR_RS15945	0.29	+0.3
1,336,431	-		BBR_RS15945	0.31	+0.6
1,336,431	-		BBR_RS15945	0.31	+0.6
1,336,450	+		BBR_RS15945	0.33	+0.3
1,336,450	+		BBR_RS15945	0.33	+0.8
1,336,466	-		BBR_RS15945	0.35	+0.0
1,336,466	-		BBR_RS15945	0.35	-0.4
1,336,477	+		BBR_RS15945	0.37	-2.1
1,336,623	+		BBR_RS15945	0.55	+2.0
1,336,633	+		BBR_RS15945	0.57	-1.1
1,336,726	+		BBR_RS15945	0.69	-0.6
1,336,905	+				+0.8
1,336,915	+				+0.1
1,336,935	-				+0.7
1,336,941	+				+0.8
1,336,941	+				-1.9
1,336,949	-				+0.8
1,336,953	+				-1.2
1,336,959	-				-0.5
1,336,961	-				-1.0
1,336,970	+				-2.4
1,337,090	+				+1.2
1,337,106	+				-3.8
1,337,186	+		BBR_RS15950	0.19	-0.8
1,337,223	+		BBR_RS15950	0.23	-0.3
1,337,294	+		BBR_RS15950	0.31	-1.4
1,337,295	+		BBR_RS15950	0.31	+0.5
1,337,396	+		BBR_RS15950	0.43	-1.1
1,337,464	+		BBR_RS15950	0.50	-1.7
1,337,511	+		BBR_RS15950	0.56	-0.7
1,337,617	+		BBR_RS15950	0.68	-2.7
1,337,617	+		BBR_RS15950	0.68	-1.7
1,337,617	+		BBR_RS15950	0.68	-0.7
1,337,653	+		BBR_RS15950	0.72	-0.4
1,337,653	+		BBR_RS15950	0.72	-0.6
1,337,653	+		BBR_RS15950	0.72	-0.6
1,337,653	+		BBR_RS15950	0.72	+0.3
1,337,685	-		BBR_RS15950	0.76	+0.6
1,337,735	-		BBR_RS15950	0.81	-0.1
1,337,743	-		BBR_RS15950	0.82	+0.0
1,337,786	+		BBR_RS15950	0.87	+0.2
1,337,794	-		BBR_RS15950	0.88	+0.0
1,337,794	-		BBR_RS15950	0.88	-0.2
1,337,882	+				+0.5
1,337,900	-				-0.0
1,337,973	+				+1.4
1,337,981	-				-0.1
1,338,013	-		BBR_RS15955	0.15	+0.1
1,338,031	+		BBR_RS15955	0.20	+0.1
1,338,039	-		BBR_RS15955	0.22	-0.4
1,338,048	-		BBR_RS15955	0.24	-0.1
1,338,048	-		BBR_RS15955	0.24	+1.7
1,338,048	-		BBR_RS15955	0.24	-0.5
1,338,059	-		BBR_RS15955	0.27	-0.3
1,338,102	+		BBR_RS15955	0.38	+0.4
1,338,108	-		BBR_RS15955	0.39	+1.4
1,338,108	-		BBR_RS15955	0.39	+0.5
1,338,115	-		BBR_RS15955	0.41	-0.3
1,338,236	-		BBR_RS15955	0.71	-0.5
1,338,243	-		BBR_RS15955	0.73	-0.3
1,338,276	+		BBR_RS15955	0.81	-0.1
1,338,317	-				+0.7
1,338,444	-				+1.0
1,338,495	-		BBR_RS15960	0.14	+0.2
1,338,577	-		BBR_RS15960	0.36	+0.0
1,338,577	-		BBR_RS15960	0.36	+0.0
1,338,596	-		BBR_RS15960	0.42	+0.0
1,338,635	+		BBR_RS15960	0.52	-0.6
1,338,635	+		BBR_RS15960	0.52	-0.5
1,338,635	+		BBR_RS15960	0.52	+0.2
1,338,635	+		BBR_RS15960	0.52	-1.3
1,338,678	+		BBR_RS15960	0.64	-0.6
1,338,679	-		BBR_RS15960	0.64	-0.9
1,338,681	+		BBR_RS15960	0.65	+0.3
1,338,689	-		BBR_RS15960	0.67	-0.8
1,338,689	-		BBR_RS15960	0.67	+1.7
1,338,824	-				+0.5