Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS15805

Experiment: Recovery broth with Tiamulin 2e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Tiamulin 2e-04 mM
1,309,663	+		BBR_RS15795	0.23	+0.1
1,309,705	+		BBR_RS15795	0.39	-0.0
1,309,715	-		BBR_RS15795	0.43	-1.4
1,309,715	-		BBR_RS15795	0.43	-1.6
1,309,903	-				-0.1
1,309,913	+				+0.1
1,309,921	-				+0.5
1,309,926	-				-0.2
1,309,937	+				+0.0
1,310,599	-				+1.4
1,310,635	+				+0.6
1,310,635	+				-0.3
1,310,646	+				-1.5
1,310,717	+				-0.5
1,310,725	-				-2.3
1,310,747	-				+0.5
1,310,762	+		BBR_RS15805	0.10	-1.0
1,310,763	+		BBR_RS15805	0.11	+0.7
1,310,817	-		BBR_RS15805	0.16	+0.4
1,310,817	-		BBR_RS15805	0.16	-0.2
1,310,870	-		BBR_RS15805	0.22	-1.2
1,310,912	+		BBR_RS15805	0.26	+0.1
1,310,917	+		BBR_RS15805	0.27	+3.4
1,310,925	-		BBR_RS15805	0.28	-1.1
1,310,953	-		BBR_RS15805	0.30	-0.6
1,310,955	-		BBR_RS15805	0.31	-0.6
1,310,963	-		BBR_RS15805	0.32	+0.1
1,310,963	-		BBR_RS15805	0.32	-1.5
1,310,963	-		BBR_RS15805	0.32	-1.6
1,310,963	-		BBR_RS15805	0.32	-1.6
1,310,963	-		BBR_RS15805	0.32	+1.4
1,311,042	-		BBR_RS15805	0.40	-1.4
1,311,135	+		BBR_RS15805	0.50	+0.3
1,311,135	-		BBR_RS15805	0.50	-2.6
1,311,143	-		BBR_RS15805	0.50	-1.1
1,311,143	-		BBR_RS15805	0.50	-1.4
1,311,155	-		BBR_RS15805	0.52	-1.1
1,311,166	-		BBR_RS15805	0.53	+0.5
1,311,215	-		BBR_RS15805	0.58	-0.6
1,311,407	-		BBR_RS15805	0.78	-0.2
1,311,445	-		BBR_RS15805	0.82	+0.4
1,311,503	+		BBR_RS15805	0.88	-1.3
1,311,545	+				-0.9
1,311,691	+				-0.2
1,311,691	+				-0.6
1,311,716	-				+0.8
1,311,718	-				+0.6
1,311,726	+				+0.8
1,311,739	+				-0.4
1,311,741	-				-0.4
1,311,741	-				-0.2
1,311,844	+				-0.6
1,311,853	-				-0.2
1,311,877	+				-1.0
1,311,899	-				-0.0
1,311,910	-				+0.1
1,311,921	-				+1.0
1,311,930	+				-0.9
1,311,930	+				+1.3
1,311,952	+		BBR_RS15810	0.12	-1.9
1,311,952	+		BBR_RS15810	0.12	+0.7
1,311,954	+		BBR_RS15810	0.12	-0.5
1,311,960	-		BBR_RS15810	0.13	+0.6
1,311,960	-		BBR_RS15810	0.13	+0.0
1,311,962	-		BBR_RS15810	0.13	+0.2
1,311,972	-		BBR_RS15810	0.14	+0.1
1,312,021	-		BBR_RS15810	0.20	+0.8
1,312,061	+		BBR_RS15810	0.24	+0.3
1,312,061	+		BBR_RS15810	0.24	+0.4
1,312,069	-		BBR_RS15810	0.25	+0.2
1,312,069	-		BBR_RS15810	0.25	-0.7
1,312,093	-		BBR_RS15810	0.28	+0.5
1,312,097	+		BBR_RS15810	0.29	+0.2
1,312,098	+		BBR_RS15810	0.29	-0.2
1,312,176	+		BBR_RS15810	0.38	-1.4
1,312,184	-		BBR_RS15810	0.39	+0.9
1,312,184	-		BBR_RS15810	0.39	+0.2
1,312,198	+		BBR_RS15810	0.40	+0.4
1,312,206	-		BBR_RS15810	0.41	-0.1
1,312,206	-		BBR_RS15810	0.41	-0.3
1,312,206	-		BBR_RS15810	0.41	+0.5
1,312,206	-		BBR_RS15810	0.41	+0.3
1,312,211	-		BBR_RS15810	0.42	-0.1
1,312,253	-		BBR_RS15810	0.47	-0.4
1,312,349	-		BBR_RS15810	0.58	-0.4
1,312,357	+		BBR_RS15810	0.59	+0.4
1,312,448	-		BBR_RS15810	0.69	+0.6
1,312,484	+		BBR_RS15810	0.73	+0.3
1,312,495	+		BBR_RS15810	0.74	-1.2
1,312,500	+		BBR_RS15810	0.75	+0.1
1,312,500	+		BBR_RS15810	0.75	-0.3
1,312,503	-		BBR_RS15810	0.75	+0.5
1,312,508	-		BBR_RS15810	0.76	-0.1
1,312,508	-		BBR_RS15810	0.76	+0.2
1,312,578	-		BBR_RS15810	0.84	+0.3
1,312,578	-		BBR_RS15810	0.84	+0.2
1,312,595	-		BBR_RS15810	0.86	-1.0