Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS15210

Experiment: Recovery broth with Tiamulin 2e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Tiamulin 2e-04 mM
1,180,242	+		BBR_RS15205	0.37	+1.3
1,180,334	+		BBR_RS15205	0.52	+2.3
1,180,580	+				-0.9
1,180,757	+				-0.3
1,180,757	+				+0.8
1,180,757	+				-0.9
1,180,785	-				-0.9
1,180,815	-				-1.0
1,180,920	+				-0.4
1,180,920	+				-0.6
1,180,939	+				+0.1
1,181,074	+		BBR_RS15210	0.19	-0.7
1,181,104	+		BBR_RS15210	0.21	-2.6
1,181,129	-		BBR_RS15210	0.24	+0.1
1,181,131	+		BBR_RS15210	0.24	+0.0
1,181,131	+		BBR_RS15210	0.24	-0.7
1,181,131	+		BBR_RS15210	0.24	-0.1
1,181,131	+		BBR_RS15210	0.24	-0.2
1,181,139	-		BBR_RS15210	0.25	+0.3
1,181,139	-		BBR_RS15210	0.25	-0.9
1,181,139	-		BBR_RS15210	0.25	-0.1
1,181,173	-		BBR_RS15210	0.28	+0.0
1,181,238	+		BBR_RS15210	0.33	-0.7
1,181,272	+		BBR_RS15210	0.36	-0.8
1,181,272	+		BBR_RS15210	0.36	-0.4
1,181,318	+		BBR_RS15210	0.40	-0.2
1,181,346	-		BBR_RS15210	0.43	+1.0
1,181,381	+		BBR_RS15210	0.46	+1.1
1,181,411	+		BBR_RS15210	0.49	-0.5
1,181,523	+		BBR_RS15210	0.59	+0.2
1,181,539	+		BBR_RS15210	0.60	-0.5
1,181,539	+		BBR_RS15210	0.60	+0.5
1,181,539	+		BBR_RS15210	0.60	-0.5
1,181,547	-		BBR_RS15210	0.61	+0.3
1,181,547	-		BBR_RS15210	0.61	-1.0
1,181,547	-		BBR_RS15210	0.61	-0.1
1,181,547	-		BBR_RS15210	0.61	+0.0
1,181,577	-		BBR_RS15210	0.63	+1.3
1,181,626	+		BBR_RS15210	0.68	-2.8
1,181,626	+		BBR_RS15210	0.68	-0.9
1,181,636	+		BBR_RS15210	0.69	-1.5
1,181,636	+		BBR_RS15210	0.69	-2.0
1,181,725	+		BBR_RS15210	0.77	-1.7
1,181,744	+		BBR_RS15210	0.78	-1.6
1,181,744	+		BBR_RS15210	0.78	-3.1
1,181,790	-		BBR_RS15210	0.82	-1.6
1,181,907	+				-0.5
1,181,948	-				-2.0
1,181,948	-				+0.2
1,181,958	-				+1.3
1,182,009	+				-0.3
1,182,019	+				-0.4
1,182,135	+				-0.8
1,182,145	+				-1.0
1,182,148	-				-0.7
1,182,196	+				+0.5
1,182,217	+				+0.1
1,182,239	-				-1.1
1,182,254	-				+0.2
1,182,277	+		BBR_RS15215	0.10	-0.6
1,182,301	-		BBR_RS15215	0.13	+0.8
1,182,304	+		BBR_RS15215	0.13	+1.3
1,182,304	+		BBR_RS15215	0.13	-0.1
1,182,312	-		BBR_RS15215	0.14	+0.9
1,182,312	-		BBR_RS15215	0.14	+0.5
1,182,312	-		BBR_RS15215	0.14	+0.0
1,182,428	+		BBR_RS15215	0.27	-0.6
1,182,512	+		BBR_RS15215	0.37	-0.4
1,182,528	+		BBR_RS15215	0.39	+1.2
1,182,528	+		BBR_RS15215	0.39	+0.8
1,182,536	-		BBR_RS15215	0.39	-1.9
1,182,728	-		BBR_RS15215	0.61	+0.1
1,182,744	+		BBR_RS15215	0.63	-0.1
1,182,750	-		BBR_RS15215	0.64	+0.1
1,182,794	-		BBR_RS15215	0.69	+0.4
1,182,830	-		BBR_RS15215	0.73	-1.1
1,182,858	+		BBR_RS15215	0.76	+0.4
1,182,866	-		BBR_RS15215	0.77	+0.5
1,182,866	-		BBR_RS15215	0.77	+0.3
1,182,927	-		BBR_RS15215	0.84	+0.6
1,182,956	+		BBR_RS15215	0.87	+0.5