Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS14585

Experiment: Recovery broth with Tiamulin 2e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Tiamulin 2e-04 mM
1,043,927	-		BBR_RS14575	0.23	-0.5
1,044,018	-		BBR_RS14575	0.44	+1.9
1,044,019	+		BBR_RS14575	0.45	+0.7
1,044,051	-		BBR_RS14575	0.52	+0.4
1,044,139	+		BBR_RS14575	0.73	-0.2
1,044,149	+		BBR_RS14575	0.76	+1.4
1,044,149	+		BBR_RS14575	0.76	+0.5
1,044,217	+				+0.0
1,044,257	+				+0.0
1,044,308	-				+0.6
1,044,327	+				+0.4
1,044,327	+				-0.8
1,044,327	+				-0.3
1,044,335	-				-0.1
1,044,370	-				-0.3
1,044,464	+				-2.2
1,044,471	+		BBR_RS20835	0.10	-0.3
1,044,501	-		BBR_RS20835	0.17	-1.2
1,044,510	+		BBR_RS20835	0.19	-0.5
1,044,529	+		BBR_RS20835	0.23	+0.1
1,044,529	+		BBR_RS20835	0.23	+0.3
1,044,535	-		BBR_RS20835	0.24	-0.5
1,044,631	+		BBR_RS20835	0.45	-0.1
1,044,631	+		BBR_RS20835	0.45	+0.7
1,044,758	+		BBR_RS20835	0.72	+1.7
1,044,815	+		BBR_RS20835	0.85	+0.3
1,044,815	+		BBR_RS20835	0.85	+0.2
1,044,874	+				+1.3
1,044,874	+				+0.8
1,044,874	+				+0.5
1,044,874	+				-0.5
1,044,874	-				+0.4
1,044,888	-				+1.0
1,044,905	+				+0.1
1,044,905	+				-0.1
1,045,003	-		BBR_RS14585	0.48	-1.7
1,045,025	-		BBR_RS14585	0.58	-0.8
1,045,061	-		BBR_RS14585	0.73	-0.5
1,045,175	-				+1.9
1,045,210	+				+0.5
1,045,289	+				-0.5
1,045,354	-		BBR_RS14590	0.15	-1.6
1,045,364	-		BBR_RS14590	0.16	-0.7
1,045,386	+		BBR_RS14590	0.19	+0.0
1,045,394	-		BBR_RS14590	0.20	+1.5
1,045,498	-		BBR_RS14590	0.32	-1.4
1,045,562	+		BBR_RS14590	0.39	-0.6
1,045,562	+		BBR_RS14590	0.39	+0.1
1,045,685	+		BBR_RS14590	0.53	+1.9
1,045,693	-		BBR_RS14590	0.54	+0.8
1,045,693	-		BBR_RS14590	0.54	+0.3
1,045,695	+		BBR_RS14590	0.54	-0.1
1,045,695	+		BBR_RS14590	0.54	-0.1
1,045,695	+		BBR_RS14590	0.54	-1.9
1,045,703	-		BBR_RS14590	0.55	+0.1
1,045,703	-		BBR_RS14590	0.55	-2.5
1,045,712	+		BBR_RS14590	0.56	+0.5
1,045,740	-		BBR_RS14590	0.59	-0.1
1,045,740	-		BBR_RS14590	0.59	+0.5
1,045,745	-		BBR_RS14590	0.60	+0.4
1,045,756	-		BBR_RS14590	0.61	+1.1
1,045,803	+		BBR_RS14590	0.67	+0.6
1,045,811	-		BBR_RS14590	0.67	-1.7
1,045,813	+		BBR_RS14590	0.68	+0.8
1,045,837	+		BBR_RS14590	0.70	+1.0
1,045,850	-		BBR_RS14590	0.72	+1.6
1,045,906	+		BBR_RS14590	0.78	+0.6
1,045,919	+		BBR_RS14590	0.80	+0.7
1,045,931	+		BBR_RS14590	0.81	-1.0
1,045,931	+		BBR_RS14590	0.81	+0.1
1,045,944	-		BBR_RS14590	0.83	+0.7
1,046,056	-				+0.4
1,046,079	-				+1.0