Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS14200

Experiment: Recovery broth with Tiamulin 2e-04 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBBR_RS14190 and BBR_RS14200 are separated by 260 nucleotidesBBR_RS14200 and BBR_RS14205 are separated by 45 nucleotides BBR_RS14190: BBR_RS14190 - transcriptional regulator, at 958,503 to 959,837 _RS14190 BBR_RS14200: BBR_RS14200 - WhiB family transcriptional regulator, at 960,098 to 960,397 _RS14200 BBR_RS14205: BBR_RS14205 - hypothetical protein, at 960,443 to 963,535 _RS14205 Position (kb) 960 961Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 959.119 kb on + strand, within BBR_RS14190at 959.119 kb on + strand, within BBR_RS14190at 959.119 kb on + strand, within BBR_RS14190at 959.176 kb on - strand, within BBR_RS14190at 959.176 kb on - strand, within BBR_RS14190at 959.185 kb on - strand, within BBR_RS14190at 959.194 kb on + strand, within BBR_RS14190at 959.205 kb on + strand, within BBR_RS14190at 959.205 kb on + strand, within BBR_RS14190at 959.280 kb on - strand, within BBR_RS14190at 959.280 kb on - strand, within BBR_RS14190at 959.282 kb on + strand, within BBR_RS14190at 959.358 kb on + strand, within BBR_RS14190at 959.373 kb on - strand, within BBR_RS14190at 959.394 kb on + strand, within BBR_RS14190at 959.427 kb on + strand, within BBR_RS14190at 959.444 kb on + strand, within BBR_RS14190at 959.444 kb on - strand, within BBR_RS14190at 959.450 kb on + strand, within BBR_RS14190at 959.452 kb on - strand, within BBR_RS14190at 959.481 kb on - strand, within BBR_RS14190at 959.491 kb on - strand, within BBR_RS14190at 959.527 kb on - strand, within BBR_RS14190at 959.575 kb on + strand, within BBR_RS14190at 959.597 kb on + strand, within BBR_RS14190at 959.597 kb on + strand, within BBR_RS14190at 959.605 kb on - strand, within BBR_RS14190at 959.612 kb on + strand, within BBR_RS14190at 959.620 kb on - strand, within BBR_RS14190at 959.637 kb on - strand, within BBR_RS14190at 959.652 kb on - strand, within BBR_RS14190at 959.688 kb on - strand, within BBR_RS14190at 959.735 kb on - strandat 959.758 kb on - strandat 959.908 kb on - strandat 959.929 kb on - strandat 959.932 kb on + strandat 959.964 kb on - strandat 960.142 kb on + strand, within BBR_RS14200at 960.142 kb on + strand, within BBR_RS14200at 960.150 kb on - strand, within BBR_RS14200at 960.154 kb on + strand, within BBR_RS14200at 960.154 kb on + strand, within BBR_RS14200at 960.162 kb on - strand, within BBR_RS14200at 960.162 kb on - strand, within BBR_RS14200at 960.195 kb on + strand, within BBR_RS14200at 960.205 kb on + strand, within BBR_RS14200at 960.342 kb on + strand, within BBR_RS14200at 960.350 kb on - strand, within BBR_RS14200at 960.379 kb on + strandat 960.397 kb on + strandat 960.439 kb on - strandat 960.516 kb on + strandat 960.946 kb on - strand, within BBR_RS14205at 961.366 kb on + strand, within BBR_RS14205

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Tiamulin 2e-04 mM
remove
959,119 + BBR_RS14190 0.46 -0.8
959,119 + BBR_RS14190 0.46 -0.2
959,119 + BBR_RS14190 0.46 -0.6
959,176 - BBR_RS14190 0.50 -0.3
959,176 - BBR_RS14190 0.50 -1.3
959,185 - BBR_RS14190 0.51 -0.3
959,194 + BBR_RS14190 0.52 -1.2
959,205 + BBR_RS14190 0.53 -0.8
959,205 + BBR_RS14190 0.53 -0.1
959,280 - BBR_RS14190 0.58 -2.2
959,280 - BBR_RS14190 0.58 -1.7
959,282 + BBR_RS14190 0.58 +0.0
959,358 + BBR_RS14190 0.64 -0.2
959,373 - BBR_RS14190 0.65 -2.1
959,394 + BBR_RS14190 0.67 -0.6
959,427 + BBR_RS14190 0.69 -0.8
959,444 + BBR_RS14190 0.70 -2.1
959,444 - BBR_RS14190 0.70 -1.3
959,450 + BBR_RS14190 0.71 -2.8
959,452 - BBR_RS14190 0.71 -1.0
959,481 - BBR_RS14190 0.73 +0.9
959,491 - BBR_RS14190 0.74 -1.3
959,527 - BBR_RS14190 0.77 -0.1
959,575 + BBR_RS14190 0.80 -0.5
959,597 + BBR_RS14190 0.82 -2.6
959,597 + BBR_RS14190 0.82 -1.2
959,605 - BBR_RS14190 0.83 -2.0
959,612 + BBR_RS14190 0.83 +1.1
959,620 - BBR_RS14190 0.84 -1.1
959,637 - BBR_RS14190 0.85 -1.6
959,652 - BBR_RS14190 0.86 -1.3
959,688 - BBR_RS14190 0.89 +0.9
959,735 - +0.6
959,758 - -0.0
959,908 - -0.1
959,929 - +0.6
959,932 + +0.0
959,964 - -0.3
960,142 + BBR_RS14200 0.15 -0.6
960,142 + BBR_RS14200 0.15 -0.5
960,150 - BBR_RS14200 0.17 -1.0
960,154 + BBR_RS14200 0.19 -1.0
960,154 + BBR_RS14200 0.19 -1.7
960,162 - BBR_RS14200 0.21 -1.2
960,162 - BBR_RS14200 0.21 -0.0
960,195 + BBR_RS14200 0.32 +1.6
960,205 + BBR_RS14200 0.36 -1.4
960,342 + BBR_RS14200 0.81 -0.4
960,350 - BBR_RS14200 0.84 +0.6
960,379 + -1.8
960,397 + +0.6
960,439 - -2.9
960,516 + +2.6
960,946 - BBR_RS14205 0.16 +1.0
961,366 + BBR_RS14205 0.30 +2.6

Or see this region's nucleotide sequence