Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13980

Experiment: Recovery broth with Tiamulin 2e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Tiamulin 2e-04 mM
911,685	-		BBR_RS13970	0.73	+0.3
911,699	+		BBR_RS13970	0.75	-0.4
911,701	+		BBR_RS13970	0.75	-0.7
911,707	-		BBR_RS13970	0.76	-1.6
911,731	-		BBR_RS13970	0.79	-0.3
911,764	-		BBR_RS13970	0.83	-0.0
911,776	-		BBR_RS13970	0.84	-0.1
911,776	-		BBR_RS13970	0.84	+0.9
911,836	-				+0.8
911,840	-				+0.7
911,841	-				+1.1
911,842	-				-0.0
911,845	-				-0.1
911,899	+				-0.6
911,899	+				-0.0
911,907	-				-2.3
911,907	-				+1.6
911,917	+				-0.5
911,928	-				+2.5
911,941	+				+0.5
911,941	+				-0.5
911,954	-				-0.3
912,009	+				+0.1
912,011	+				+0.9
912,011	+				+0.2
912,011	+				+0.4
912,029	-				+0.2
912,029	-				+0.4
912,029	-				+0.5
912,039	-				+0.2
912,039	-				-0.3
912,058	+				+0.2
912,090	+		BBR_RS13975	0.10	+0.4
912,104	-		BBR_RS13975	0.14	-0.1
912,149	+		BBR_RS13975	0.25	+1.4
912,157	-		BBR_RS13975	0.27	+0.7
912,199	+		BBR_RS13975	0.38	-0.9
912,199	+		BBR_RS13975	0.38	-0.1
912,246	-		BBR_RS13975	0.50	-0.1
912,251	-		BBR_RS13975	0.51	+0.9
912,271	+		BBR_RS13975	0.56	-0.4
912,276	+		BBR_RS13975	0.58	-0.1
912,279	-		BBR_RS13975	0.59	-0.5
912,310	-		BBR_RS13975	0.66	-0.2
912,359	-		BBR_RS13975	0.79	-0.2
912,359	-		BBR_RS13975	0.79	-0.1
912,359	-		BBR_RS13975	0.79	-0.1
912,362	-		BBR_RS13975	0.80	-1.2
912,363	+		BBR_RS13975	0.80	-1.0
912,371	+		BBR_RS13975	0.82	+0.6
912,372	-		BBR_RS13975	0.82	-0.5
912,430	+				-0.1
912,430	+				+0.4
912,435	+				-0.8
912,443	-				+0.3
912,457	-				-0.8
912,488	+				+1.1
912,488	+				+0.1
912,488	+				+0.0
912,493	+				+0.3
912,517	+				-0.1
912,555	+				+0.7
912,560	+				+0.2
912,563	+				+0.1
912,570	-				+0.7
912,637	+				+0.5
912,691	+				-0.6
912,699	-		BBR_RS13980	0.11	-0.2
912,808	+		BBR_RS13980	0.30	-0.5
912,897	+		BBR_RS13980	0.45	-0.5
912,897	+		BBR_RS13980	0.45	-1.2
912,915	-		BBR_RS13980	0.48	+0.2
912,940	+		BBR_RS13980	0.53	-0.7
912,966	+		BBR_RS13980	0.57	-1.2
913,060	+		BBR_RS13980	0.74	-0.8
913,087	-		BBR_RS13980	0.79	-0.3
913,161	+				-1.1
913,179	-				+0.4
913,184	+				-0.6
913,262	-				+1.3
913,334	+		BBR_RS13985	0.15	-0.1
913,377	-		BBR_RS13985	0.21	-0.8
913,444	-		BBR_RS13985	0.29	+0.1
913,487	+		BBR_RS13985	0.35	-0.2
913,538	-		BBR_RS13985	0.42	+1.6
913,628	+		BBR_RS13985	0.53	-3.4
913,755	+		BBR_RS13985	0.70	-0.0
913,755	+		BBR_RS13985	0.70	-0.4
913,768	-		BBR_RS13985	0.72	-0.7
913,774	-		BBR_RS13985	0.72	-0.9
913,774	-		BBR_RS13985	0.72	-0.2
913,783	+		BBR_RS13985	0.74	+0.5
913,864	-		BBR_RS13985	0.84	+0.3
913,864	-		BBR_RS13985	0.84	-0.1
913,865	+		BBR_RS13985	0.84	-0.6
913,894	+		BBR_RS13985	0.88	+0.2
913,901	+		BBR_RS13985	0.89	-1.1
913,909	-				+0.6
914,024	+				+0.2
914,065	-				+0.6
914,092	-				-0.7
914,113	-				+0.4
914,117	+				+0.4
914,125	-				+2.6
914,141	-				-0.8
914,182	+				-0.8
914,186	-				-0.4
914,191	-		BBR_RS13990	0.10	-0.4
914,200	-		BBR_RS13990	0.11	-0.6