Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13375

Experiment: Recovery broth with Tiamulin 2e-04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13370 and BBR_RS13375 are separated by 26 nucleotidesBBR_RS13375 and BBR_RS13380 are separated by 116 nucleotides BBR_RS13370: BBR_RS13370 - phosphoribosylamine--glycine ligase, at 772,512 to 773,780 _RS13370 BBR_RS13375: BBR_RS13375 - phosphoribosylformylglycinamidine cyclo-ligase, at 773,807 to 774,844 _RS13375 BBR_RS13380: BBR_RS13380 - amidophosphoribosyltransferase, at 774,961 to 776,472 _RS13380 Position (kb) 773 774 775Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 773.309 kb on + strand, within BBR_RS13370at 773.415 kb on - strand, within BBR_RS13370at 773.415 kb on - strand, within BBR_RS13370at 773.590 kb on - strand, within BBR_RS13370at 773.594 kb on + strand, within BBR_RS13370at 773.620 kb on - strand, within BBR_RS13370at 773.644 kb on - strand, within BBR_RS13370at 773.710 kb on + strandat 773.854 kb on - strandat 773.932 kb on - strand, within BBR_RS13375at 773.932 kb on - strand, within BBR_RS13375at 773.966 kb on - strand, within BBR_RS13375at 774.101 kb on + strand, within BBR_RS13375at 774.122 kb on - strand, within BBR_RS13375at 774.124 kb on + strand, within BBR_RS13375at 774.137 kb on - strand, within BBR_RS13375at 774.137 kb on - strand, within BBR_RS13375at 774.164 kb on - strand, within BBR_RS13375at 774.166 kb on + strand, within BBR_RS13375at 774.232 kb on - strand, within BBR_RS13375at 774.256 kb on - strand, within BBR_RS13375at 774.284 kb on - strand, within BBR_RS13375at 774.284 kb on - strand, within BBR_RS13375at 774.435 kb on + strand, within BBR_RS13375at 774.453 kb on - strand, within BBR_RS13375at 774.491 kb on - strand, within BBR_RS13375at 774.558 kb on - strand, within BBR_RS13375at 774.679 kb on - strand, within BBR_RS13375at 774.884 kb on - strandat 774.935 kb on + strandat 774.968 kb on - strandat 774.983 kb on + strandat 774.991 kb on - strandat 774.991 kb on - strandat 774.991 kb on - strandat 774.991 kb on - strandat 774.991 kb on - strandat 774.991 kb on - strandat 774.991 kb on - strandat 774.993 kb on - strandat 775.010 kb on + strandat 775.018 kb on - strandat 775.018 kb on - strandat 775.018 kb on - strandat 775.018 kb on - strandat 775.033 kb on - strandat 775.035 kb on - strandat 775.043 kb on - strandat 775.053 kb on - strandat 775.053 kb on - strandat 775.053 kb on - strandat 775.053 kb on - strandat 775.061 kb on - strandat 775.143 kb on - strand, within BBR_RS13380at 775.248 kb on - strand, within BBR_RS13380at 775.326 kb on - strand, within BBR_RS13380at 775.424 kb on + strand, within BBR_RS13380at 775.426 kb on - strand, within BBR_RS13380at 775.431 kb on - strand, within BBR_RS13380at 775.564 kb on - strand, within BBR_RS13380at 775.575 kb on - strand, within BBR_RS13380at 775.599 kb on - strand, within BBR_RS13380at 775.682 kb on - strand, within BBR_RS13380at 775.717 kb on - strand, within BBR_RS13380at 775.717 kb on - strand, within BBR_RS13380at 775.750 kb on + strand, within BBR_RS13380at 775.759 kb on + strand, within BBR_RS13380at 775.814 kb on - strand, within BBR_RS13380at 775.827 kb on - strand, within BBR_RS13380at 775.832 kb on - strand, within BBR_RS13380at 775.837 kb on - strand, within BBR_RS13380

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Tiamulin 2e-04 mM
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773,309 + BBR_RS13370 0.63 +0.7
773,415 - BBR_RS13370 0.71 -2.3
773,415 - BBR_RS13370 0.71 -1.9
773,590 - BBR_RS13370 0.85 -0.7
773,594 + BBR_RS13370 0.85 -0.7
773,620 - BBR_RS13370 0.87 -0.7
773,644 - BBR_RS13370 0.89 +1.7
773,710 + +0.4
773,854 - -0.3
773,932 - BBR_RS13375 0.12 -0.2
773,932 - BBR_RS13375 0.12 +0.6
773,966 - BBR_RS13375 0.15 -0.5
774,101 + BBR_RS13375 0.28 +3.3
774,122 - BBR_RS13375 0.30 -0.4
774,124 + BBR_RS13375 0.31 +0.7
774,137 - BBR_RS13375 0.32 -2.5
774,137 - BBR_RS13375 0.32 -2.0
774,164 - BBR_RS13375 0.34 -0.2
774,166 + BBR_RS13375 0.35 -0.4
774,232 - BBR_RS13375 0.41 -1.7
774,256 - BBR_RS13375 0.43 -2.0
774,284 - BBR_RS13375 0.46 -1.4
774,284 - BBR_RS13375 0.46 -1.7
774,435 + BBR_RS13375 0.61 -0.7
774,453 - BBR_RS13375 0.62 +0.6
774,491 - BBR_RS13375 0.66 -1.0
774,558 - BBR_RS13375 0.72 -1.5
774,679 - BBR_RS13375 0.84 -0.3
774,884 - -0.2
774,935 + +1.7
774,968 - +0.3
774,983 + +1.4
774,991 - -1.7
774,991 - +0.0
774,991 - -0.3
774,991 - +0.2
774,991 - -0.6
774,991 - -0.6
774,991 - -0.9
774,993 - -0.5
775,010 + +0.7
775,018 - +1.3
775,018 - -0.4
775,018 - -1.0
775,018 - -0.6
775,033 - -1.3
775,035 - -0.4
775,043 - -1.5
775,053 - -0.4
775,053 - -1.2
775,053 - -3.1
775,053 - -0.6
775,061 - +0.4
775,143 - BBR_RS13380 0.12 -0.6
775,248 - BBR_RS13380 0.19 -0.9
775,326 - BBR_RS13380 0.24 -1.6
775,424 + BBR_RS13380 0.31 +1.7
775,426 - BBR_RS13380 0.31 +1.3
775,431 - BBR_RS13380 0.31 -1.3
775,564 - BBR_RS13380 0.40 +0.0
775,575 - BBR_RS13380 0.41 +0.7
775,599 - BBR_RS13380 0.42 -0.9
775,682 - BBR_RS13380 0.48 -0.8
775,717 - BBR_RS13380 0.50 -0.6
775,717 - BBR_RS13380 0.50 +0.1
775,750 + BBR_RS13380 0.52 -0.6
775,759 + BBR_RS13380 0.53 +1.7
775,814 - BBR_RS13380 0.56 +0.3
775,827 - BBR_RS13380 0.57 -1.0
775,832 - BBR_RS13380 0.58 +0.9
775,837 - BBR_RS13380 0.58 -1.6

Or see this region's nucleotide sequence