Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS11950

Experiment: Recovery broth with Tiamulin 2e-04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS20505 and BBR_RS11950 are separated by 67 nucleotidesBBR_RS11950 and BBR_RS20510 are separated by 62 nucleotidesBBR_RS20510 and BBR_RS11960 are separated by 9 nucleotides BBR_RS20505: BBR_RS20505 - hypothetical protein, at 436,326 to 437,522 _RS20505 BBR_RS11950: BBR_RS11950 - tRNA-Tyr, at 437,590 to 437,671 _RS11950 BBR_RS20510: BBR_RS20510 - Conserved hypothetical protein, phage protein, at 437,734 to 438,225 _RS20510 BBR_RS11960: BBR_RS11960 - phage head protein, at 438,235 to 439,134 _RS11960 Position (kb) 437 438Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 436.597 kb on - strand, within BBR_RS20505at 436.608 kb on + strand, within BBR_RS20505at 436.638 kb on + strand, within BBR_RS20505at 436.646 kb on - strand, within BBR_RS20505at 436.646 kb on - strand, within BBR_RS20505at 436.673 kb on + strand, within BBR_RS20505at 436.674 kb on + strand, within BBR_RS20505at 436.690 kb on - strand, within BBR_RS20505at 436.695 kb on - strand, within BBR_RS20505at 436.715 kb on - strand, within BBR_RS20505at 436.715 kb on - strand, within BBR_RS20505at 436.761 kb on + strand, within BBR_RS20505at 436.769 kb on - strand, within BBR_RS20505at 436.769 kb on - strand, within BBR_RS20505at 436.800 kb on + strand, within BBR_RS20505at 436.800 kb on - strand, within BBR_RS20505at 436.808 kb on - strand, within BBR_RS20505at 436.843 kb on + strand, within BBR_RS20505at 436.918 kb on - strand, within BBR_RS20505at 436.930 kb on + strand, within BBR_RS20505at 436.988 kb on + strand, within BBR_RS20505at 436.991 kb on - strand, within BBR_RS20505at 436.991 kb on - strand, within BBR_RS20505at 436.996 kb on - strand, within BBR_RS20505at 437.021 kb on + strand, within BBR_RS20505at 437.022 kb on + strand, within BBR_RS20505at 437.022 kb on + strand, within BBR_RS20505at 437.022 kb on + strand, within BBR_RS20505at 437.030 kb on - strand, within BBR_RS20505at 437.030 kb on - strand, within BBR_RS20505at 437.030 kb on - strand, within BBR_RS20505at 437.037 kb on - strand, within BBR_RS20505at 437.082 kb on - strand, within BBR_RS20505at 437.082 kb on - strand, within BBR_RS20505at 437.090 kb on + strand, within BBR_RS20505at 437.097 kb on - strand, within BBR_RS20505at 437.097 kb on - strand, within BBR_RS20505at 437.117 kb on - strand, within BBR_RS20505at 437.117 kb on - strand, within BBR_RS20505at 437.117 kb on - strand, within BBR_RS20505at 437.122 kb on + strand, within BBR_RS20505at 437.136 kb on - strand, within BBR_RS20505at 437.143 kb on + strand, within BBR_RS20505at 437.163 kb on + strand, within BBR_RS20505at 437.190 kb on - strand, within BBR_RS20505at 437.190 kb on - strand, within BBR_RS20505at 437.236 kb on + strand, within BBR_RS20505at 437.254 kb on + strand, within BBR_RS20505at 437.254 kb on - strand, within BBR_RS20505at 437.254 kb on - strand, within BBR_RS20505at 437.254 kb on - strand, within BBR_RS20505at 437.269 kb on - strand, within BBR_RS20505at 437.277 kb on - strand, within BBR_RS20505at 437.277 kb on - strand, within BBR_RS20505at 437.278 kb on + strand, within BBR_RS20505at 437.288 kb on + strand, within BBR_RS20505at 437.288 kb on + strand, within BBR_RS20505at 437.288 kb on + strand, within BBR_RS20505at 437.288 kb on + strand, within BBR_RS20505at 437.296 kb on - strand, within BBR_RS20505at 437.296 kb on - strand, within BBR_RS20505at 437.321 kb on - strand, within BBR_RS20505at 437.348 kb on - strand, within BBR_RS20505at 437.357 kb on - strand, within BBR_RS20505at 437.380 kb on + strand, within BBR_RS20505at 437.388 kb on - strand, within BBR_RS20505at 437.419 kb on - strandat 437.425 kb on + strandat 437.436 kb on + strandat 437.445 kb on + strandat 437.445 kb on + strandat 437.461 kb on + strandat 437.468 kb on + strandat 437.478 kb on + strandat 437.513 kb on + strandat 437.521 kb on - strandat 437.521 kb on - strandat 437.521 kb on - strandat 437.553 kb on - strandat 437.564 kb on + strandat 437.594 kb on + strandat 437.611 kb on + strand, within BBR_RS11950at 437.613 kb on + strand, within BBR_RS11950at 437.614 kb on - strand, within BBR_RS11950at 437.626 kb on - strand, within BBR_RS11950at 437.629 kb on - strand, within BBR_RS11950at 437.635 kb on + strand, within BBR_RS11950at 437.635 kb on - strand, within BBR_RS11950at 437.636 kb on - strand, within BBR_RS11950at 437.643 kb on - strand, within BBR_RS11950at 437.659 kb on - strand, within BBR_RS11950at 437.672 kb on + strandat 437.680 kb on - strandat 437.798 kb on + strand, within BBR_RS20510at 437.808 kb on - strand, within BBR_RS20510at 437.839 kb on + strand, within BBR_RS20510at 437.856 kb on + strand, within BBR_RS20510at 437.856 kb on + strand, within BBR_RS20510at 437.856 kb on + strand, within BBR_RS20510at 437.864 kb on - strand, within BBR_RS20510at 437.892 kb on - strand, within BBR_RS20510at 437.899 kb on + strand, within BBR_RS20510at 437.899 kb on + strand, within BBR_RS20510at 437.901 kb on + strand, within BBR_RS20510at 437.901 kb on + strand, within BBR_RS20510at 437.901 kb on + strand, within BBR_RS20510at 437.901 kb on + strand, within BBR_RS20510at 437.901 kb on + strand, within BBR_RS20510at 437.901 kb on + strand, within BBR_RS20510at 437.901 kb on + strand, within BBR_RS20510at 437.901 kb on + strand, within BBR_RS20510at 437.907 kb on - strand, within BBR_RS20510at 437.907 kb on - strand, within BBR_RS20510at 437.909 kb on - strand, within BBR_RS20510at 437.909 kb on - strand, within BBR_RS20510at 437.909 kb on - strand, within BBR_RS20510at 437.909 kb on - strand, within BBR_RS20510at 437.909 kb on - strand, within BBR_RS20510at 437.909 kb on - strand, within BBR_RS20510at 437.909 kb on - strand, within BBR_RS20510at 437.943 kb on - strand, within BBR_RS20510at 437.956 kb on + strand, within BBR_RS20510at 437.961 kb on + strand, within BBR_RS20510at 437.969 kb on - strand, within BBR_RS20510at 437.969 kb on - strand, within BBR_RS20510at 437.976 kb on + strand, within BBR_RS20510at 437.976 kb on + strand, within BBR_RS20510at 437.991 kb on + strand, within BBR_RS20510at 437.996 kb on + strand, within BBR_RS20510at 438.005 kb on - strand, within BBR_RS20510at 438.014 kb on - strand, within BBR_RS20510at 438.048 kb on + strand, within BBR_RS20510at 438.056 kb on - strand, within BBR_RS20510at 438.056 kb on - strand, within BBR_RS20510at 438.056 kb on - strand, within BBR_RS20510at 438.056 kb on - strand, within BBR_RS20510at 438.080 kb on - strand, within BBR_RS20510at 438.091 kb on + strand, within BBR_RS20510at 438.093 kb on + strand, within BBR_RS20510at 438.099 kb on + strand, within BBR_RS20510at 438.106 kb on + strand, within BBR_RS20510at 438.113 kb on + strand, within BBR_RS20510at 438.113 kb on + strand, within BBR_RS20510at 438.121 kb on - strand, within BBR_RS20510at 438.121 kb on - strand, within BBR_RS20510at 438.121 kb on - strand, within BBR_RS20510at 438.126 kb on + strand, within BBR_RS20510at 438.128 kb on + strand, within BBR_RS20510at 438.138 kb on + strand, within BBR_RS20510at 438.138 kb on + strand, within BBR_RS20510at 438.143 kb on + strand, within BBR_RS20510at 438.146 kb on - strand, within BBR_RS20510at 438.151 kb on - strand, within BBR_RS20510at 438.161 kb on + strand, within BBR_RS20510at 438.169 kb on - strand, within BBR_RS20510at 438.171 kb on + strand, within BBR_RS20510at 438.172 kb on - strand, within BBR_RS20510at 438.177 kb on + strandat 438.179 kb on - strandat 438.179 kb on - strandat 438.219 kb on + strandat 438.219 kb on + strandat 438.227 kb on - strandat 438.227 kb on - strandat 438.234 kb on - strandat 438.239 kb on - strandat 438.262 kb on + strandat 438.262 kb on + strandat 438.262 kb on - strandat 438.262 kb on - strandat 438.264 kb on + strandat 438.264 kb on + strandat 438.264 kb on + strandat 438.264 kb on + strandat 438.264 kb on + strandat 438.267 kb on + strandat 438.270 kb on - strandat 438.270 kb on - strandat 438.272 kb on - strandat 438.272 kb on - strandat 438.297 kb on + strandat 438.298 kb on + strandat 438.305 kb on - strandat 438.306 kb on + strandat 438.306 kb on + strandat 438.311 kb on - strandat 438.312 kb on - strandat 438.327 kb on + strand, within BBR_RS11960at 438.327 kb on + strand, within BBR_RS11960at 438.335 kb on - strand, within BBR_RS11960at 438.335 kb on - strand, within BBR_RS11960at 438.335 kb on - strand, within BBR_RS11960at 438.335 kb on - strand, within BBR_RS11960at 438.335 kb on - strand, within BBR_RS11960at 438.335 kb on - strand, within BBR_RS11960at 438.335 kb on - strand, within BBR_RS11960at 438.363 kb on + strand, within BBR_RS11960at 438.381 kb on - strand, within BBR_RS11960at 438.408 kb on - strand, within BBR_RS11960at 438.440 kb on + strand, within BBR_RS11960at 438.440 kb on + strand, within BBR_RS11960at 438.448 kb on - strand, within BBR_RS11960at 438.448 kb on - strand, within BBR_RS11960at 438.450 kb on + strand, within BBR_RS11960at 438.462 kb on + strand, within BBR_RS11960at 438.462 kb on + strand, within BBR_RS11960at 438.477 kb on + strand, within BBR_RS11960at 438.486 kb on - strand, within BBR_RS11960at 438.486 kb on - strand, within BBR_RS11960at 438.491 kb on + strand, within BBR_RS11960at 438.491 kb on + strand, within BBR_RS11960at 438.499 kb on - strand, within BBR_RS11960at 438.501 kb on + strand, within BBR_RS11960at 438.501 kb on + strand, within BBR_RS11960at 438.509 kb on - strand, within BBR_RS11960at 438.526 kb on - strand, within BBR_RS11960at 438.556 kb on + strand, within BBR_RS11960at 438.556 kb on + strand, within BBR_RS11960at 438.556 kb on + strand, within BBR_RS11960at 438.561 kb on + strand, within BBR_RS11960at 438.564 kb on - strand, within BBR_RS11960at 438.564 kb on - strand, within BBR_RS11960at 438.564 kb on - strand, within BBR_RS11960at 438.569 kb on - strand, within BBR_RS11960at 438.569 kb on - strand, within BBR_RS11960at 438.569 kb on - strand, within BBR_RS11960at 438.579 kb on + strand, within BBR_RS11960at 438.591 kb on - strand, within BBR_RS11960at 438.607 kb on - strand, within BBR_RS11960at 438.607 kb on - strand, within BBR_RS11960at 438.612 kb on + strand, within BBR_RS11960at 438.614 kb on - strand, within BBR_RS11960at 438.626 kb on - strand, within BBR_RS11960at 438.629 kb on - strand, within BBR_RS11960at 438.639 kb on - strand, within BBR_RS11960at 438.654 kb on - strand, within BBR_RS11960at 438.664 kb on + strand, within BBR_RS11960at 438.669 kb on + strand, within BBR_RS11960

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Tiamulin 2e-04 mM
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436,597 - BBR_RS20505 0.23 +0.3
436,608 + BBR_RS20505 0.24 -1.1
436,638 + BBR_RS20505 0.26 +2.4
436,646 - BBR_RS20505 0.27 -0.7
436,646 - BBR_RS20505 0.27 +0.8
436,673 + BBR_RS20505 0.29 -0.7
436,674 + BBR_RS20505 0.29 +0.6
436,690 - BBR_RS20505 0.30 -2.4
436,695 - BBR_RS20505 0.31 +0.5
436,715 - BBR_RS20505 0.32 -0.4
436,715 - BBR_RS20505 0.32 +0.7
436,761 + BBR_RS20505 0.36 +1.0
436,769 - BBR_RS20505 0.37 +0.5
436,769 - BBR_RS20505 0.37 -0.4
436,800 + BBR_RS20505 0.40 -0.0
436,800 - BBR_RS20505 0.40 +0.5
436,808 - BBR_RS20505 0.40 -0.6
436,843 + BBR_RS20505 0.43 -1.6
436,918 - BBR_RS20505 0.49 +0.4
436,930 + BBR_RS20505 0.50 +0.1
436,988 + BBR_RS20505 0.55 +0.1
436,991 - BBR_RS20505 0.56 +0.3
436,991 - BBR_RS20505 0.56 -0.4
436,996 - BBR_RS20505 0.56 -1.6
437,021 + BBR_RS20505 0.58 +0.1
437,022 + BBR_RS20505 0.58 -0.0
437,022 + BBR_RS20505 0.58 +1.4
437,022 + BBR_RS20505 0.58 -0.1
437,030 - BBR_RS20505 0.59 +0.4
437,030 - BBR_RS20505 0.59 -0.0
437,030 - BBR_RS20505 0.59 +0.9
437,037 - BBR_RS20505 0.59 -0.3
437,082 - BBR_RS20505 0.63 -0.1
437,082 - BBR_RS20505 0.63 +0.3
437,090 + BBR_RS20505 0.64 -1.0
437,097 - BBR_RS20505 0.64 -0.6
437,097 - BBR_RS20505 0.64 -0.3
437,117 - BBR_RS20505 0.66 -1.5
437,117 - BBR_RS20505 0.66 -0.3
437,117 - BBR_RS20505 0.66 +0.4
437,122 + BBR_RS20505 0.66 -0.6
437,136 - BBR_RS20505 0.68 -2.3
437,143 + BBR_RS20505 0.68 +0.6
437,163 + BBR_RS20505 0.70 -1.6
437,190 - BBR_RS20505 0.72 -1.6
437,190 - BBR_RS20505 0.72 -1.1
437,236 + BBR_RS20505 0.76 -0.1
437,254 + BBR_RS20505 0.78 -0.2
437,254 - BBR_RS20505 0.78 -1.1
437,254 - BBR_RS20505 0.78 -0.6
437,254 - BBR_RS20505 0.78 +0.5
437,269 - BBR_RS20505 0.79 +0.4
437,277 - BBR_RS20505 0.79 +1.7
437,277 - BBR_RS20505 0.79 -1.8
437,278 + BBR_RS20505 0.80 +1.0
437,288 + BBR_RS20505 0.80 -0.4
437,288 + BBR_RS20505 0.80 -0.2
437,288 + BBR_RS20505 0.80 +0.4
437,288 + BBR_RS20505 0.80 -0.1
437,296 - BBR_RS20505 0.81 +1.0
437,296 - BBR_RS20505 0.81 -0.3
437,321 - BBR_RS20505 0.83 +0.5
437,348 - BBR_RS20505 0.85 +0.2
437,357 - BBR_RS20505 0.86 +0.5
437,380 + BBR_RS20505 0.88 +0.7
437,388 - BBR_RS20505 0.89 +0.4
437,419 - -0.2
437,425 + +1.2
437,436 + +0.4
437,445 + +0.4
437,445 + +0.0
437,461 + +0.5
437,468 + +1.7
437,478 + +0.1
437,513 + +0.1
437,521 - +0.3
437,521 - -0.4
437,521 - +0.9
437,553 - -0.3
437,564 + +0.7
437,594 + -0.8
437,611 + BBR_RS11950 0.26 -0.4
437,613 + BBR_RS11950 0.28 -1.9
437,614 - BBR_RS11950 0.29 -0.6
437,626 - BBR_RS11950 0.44 -1.2
437,629 - BBR_RS11950 0.48 +0.0
437,635 + BBR_RS11950 0.55 -1.7
437,635 - BBR_RS11950 0.55 +0.3
437,636 - BBR_RS11950 0.56 -1.5
437,643 - BBR_RS11950 0.65 -0.7
437,659 - BBR_RS11950 0.84 -2.6
437,672 + +0.7
437,680 - -0.1
437,798 + BBR_RS20510 0.13 +0.5
437,808 - BBR_RS20510 0.15 -0.3
437,839 + BBR_RS20510 0.21 +0.7
437,856 + BBR_RS20510 0.25 +0.6
437,856 + BBR_RS20510 0.25 -0.4
437,856 + BBR_RS20510 0.25 +0.2
437,864 - BBR_RS20510 0.26 -0.0
437,892 - BBR_RS20510 0.32 -0.4
437,899 + BBR_RS20510 0.34 +0.4
437,899 + BBR_RS20510 0.34 +1.0
437,901 + BBR_RS20510 0.34 +0.5
437,901 + BBR_RS20510 0.34 -0.8
437,901 + BBR_RS20510 0.34 +0.6
437,901 + BBR_RS20510 0.34 -1.8
437,901 + BBR_RS20510 0.34 +0.1
437,901 + BBR_RS20510 0.34 -1.6
437,901 + BBR_RS20510 0.34 -0.1
437,901 + BBR_RS20510 0.34 -1.1
437,907 - BBR_RS20510 0.35 +1.1
437,907 - BBR_RS20510 0.35 -0.8
437,909 - BBR_RS20510 0.36 -1.3
437,909 - BBR_RS20510 0.36 +0.0
437,909 - BBR_RS20510 0.36 -0.2
437,909 - BBR_RS20510 0.36 +0.3
437,909 - BBR_RS20510 0.36 -0.0
437,909 - BBR_RS20510 0.36 -0.1
437,909 - BBR_RS20510 0.36 -1.0
437,943 - BBR_RS20510 0.42 +0.5
437,956 + BBR_RS20510 0.45 -1.0
437,961 + BBR_RS20510 0.46 +0.6
437,969 - BBR_RS20510 0.48 +0.3
437,969 - BBR_RS20510 0.48 -0.8
437,976 + BBR_RS20510 0.49 -1.7
437,976 + BBR_RS20510 0.49 +0.9
437,991 + BBR_RS20510 0.52 -0.5
437,996 + BBR_RS20510 0.53 -0.4
438,005 - BBR_RS20510 0.55 +0.4
438,014 - BBR_RS20510 0.57 -0.1
438,048 + BBR_RS20510 0.64 -0.3
438,056 - BBR_RS20510 0.65 -1.1
438,056 - BBR_RS20510 0.65 +0.9
438,056 - BBR_RS20510 0.65 -1.0
438,056 - BBR_RS20510 0.65 +0.2
438,080 - BBR_RS20510 0.70 -2.4
438,091 + BBR_RS20510 0.73 +0.6
438,093 + BBR_RS20510 0.73 -1.3
438,099 + BBR_RS20510 0.74 -0.4
438,106 + BBR_RS20510 0.76 -0.3
438,113 + BBR_RS20510 0.77 -0.3
438,113 + BBR_RS20510 0.77 +0.4
438,121 - BBR_RS20510 0.79 -2.9
438,121 - BBR_RS20510 0.79 +0.4
438,121 - BBR_RS20510 0.79 -0.7
438,126 + BBR_RS20510 0.80 +0.8
438,128 + BBR_RS20510 0.80 -0.6
438,138 + BBR_RS20510 0.82 -0.6
438,138 + BBR_RS20510 0.82 -0.8
438,143 + BBR_RS20510 0.83 +0.1
438,146 - BBR_RS20510 0.84 -0.4
438,151 - BBR_RS20510 0.85 -0.9
438,161 + BBR_RS20510 0.87 -1.2
438,169 - BBR_RS20510 0.88 +0.2
438,171 + BBR_RS20510 0.89 +0.4
438,172 - BBR_RS20510 0.89 +0.3
438,177 + +0.9
438,179 - +0.5
438,179 - -1.2
438,219 + -0.0
438,219 + +0.4
438,227 - +0.4
438,227 - +1.1
438,234 - +0.8
438,239 - -0.6
438,262 + -0.4
438,262 + +0.4
438,262 - -0.1
438,262 - +0.3
438,264 + -1.4
438,264 + +0.6
438,264 + -0.1
438,264 + +0.6
438,264 + -1.1
438,267 + -0.8
438,270 - -2.6
438,270 - +0.4
438,272 - -0.2
438,272 - -0.3
438,297 + -0.6
438,298 + -0.8
438,305 - +0.1
438,306 + +0.5
438,306 + +0.9
438,311 - -0.9
438,312 - -1.0
438,327 + BBR_RS11960 0.10 -0.2
438,327 + BBR_RS11960 0.10 +0.5
438,335 - BBR_RS11960 0.11 +0.6
438,335 - BBR_RS11960 0.11 -0.1
438,335 - BBR_RS11960 0.11 +1.0
438,335 - BBR_RS11960 0.11 -0.8
438,335 - BBR_RS11960 0.11 +0.1
438,335 - BBR_RS11960 0.11 -1.4
438,335 - BBR_RS11960 0.11 +0.8
438,363 + BBR_RS11960 0.14 +0.5
438,381 - BBR_RS11960 0.16 -1.0
438,408 - BBR_RS11960 0.19 +2.0
438,440 + BBR_RS11960 0.23 +1.5
438,440 + BBR_RS11960 0.23 +0.5
438,448 - BBR_RS11960 0.24 -0.4
438,448 - BBR_RS11960 0.24 -0.9
438,450 + BBR_RS11960 0.24 +2.4
438,462 + BBR_RS11960 0.25 -0.2
438,462 + BBR_RS11960 0.25 +0.1
438,477 + BBR_RS11960 0.27 -0.1
438,486 - BBR_RS11960 0.28 -0.3
438,486 - BBR_RS11960 0.28 -2.1
438,491 + BBR_RS11960 0.28 -0.0
438,491 + BBR_RS11960 0.28 -1.4
438,499 - BBR_RS11960 0.29 +0.4
438,501 + BBR_RS11960 0.30 +0.6
438,501 + BBR_RS11960 0.30 -1.1
438,509 - BBR_RS11960 0.30 +1.2
438,526 - BBR_RS11960 0.32 -0.3
438,556 + BBR_RS11960 0.36 +1.8
438,556 + BBR_RS11960 0.36 -0.6
438,556 + BBR_RS11960 0.36 +0.2
438,561 + BBR_RS11960 0.36 -0.3
438,564 - BBR_RS11960 0.37 -0.4
438,564 - BBR_RS11960 0.37 -0.4
438,564 - BBR_RS11960 0.37 +0.4
438,569 - BBR_RS11960 0.37 -0.4
438,569 - BBR_RS11960 0.37 -0.3
438,569 - BBR_RS11960 0.37 -0.3
438,579 + BBR_RS11960 0.38 +0.6
438,591 - BBR_RS11960 0.40 -0.8
438,607 - BBR_RS11960 0.41 +0.6
438,607 - BBR_RS11960 0.41 +0.9
438,612 + BBR_RS11960 0.42 +0.1
438,614 - BBR_RS11960 0.42 -0.1
438,626 - BBR_RS11960 0.43 -1.1
438,629 - BBR_RS11960 0.44 -0.2
438,639 - BBR_RS11960 0.45 +1.3
438,654 - BBR_RS11960 0.47 +0.2
438,664 + BBR_RS11960 0.48 +1.0
438,669 + BBR_RS11960 0.48 +0.7

Or see this region's nucleotide sequence