Experiment: Recovery broth with Tiamulin 2e-04 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS11715 and BBR_RS11720 are separated by 6 nucleotides BBR_RS11720 and BBR_RS11725 are separated by 170 nucleotides
BBR_RS11715: BBR_RS11715 - N-acetyltransferase, at 383,492 to 384,538
_RS11715
BBR_RS11720: BBR_RS11720 - DUF2469 domain-containing protein, at 384,545 to 384,859
_RS11720
BBR_RS11725: BBR_RS11725 - FAD-dependent oxidoreductase, at 385,030 to 386,643
_RS11725
Position (kb) 384
385 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 383.551 kb on + strand at 383.604 kb on + strand, within BBR_RS11715 at 383.610 kb on + strand, within BBR_RS11715 at 383.636 kb on - strand, within BBR_RS11715 at 383.638 kb on + strand, within BBR_RS11715 at 383.638 kb on + strand, within BBR_RS11715 at 383.686 kb on - strand, within BBR_RS11715 at 383.699 kb on + strand, within BBR_RS11715 at 383.707 kb on + strand, within BBR_RS11715 at 383.707 kb on + strand, within BBR_RS11715 at 383.707 kb on + strand, within BBR_RS11715 at 383.707 kb on + strand, within BBR_RS11715 at 383.715 kb on - strand, within BBR_RS11715 at 383.715 kb on - strand, within BBR_RS11715 at 383.715 kb on - strand, within BBR_RS11715 at 383.728 kb on + strand, within BBR_RS11715 at 383.741 kb on + strand, within BBR_RS11715 at 383.762 kb on + strand, within BBR_RS11715 at 383.790 kb on + strand, within BBR_RS11715 at 383.794 kb on + strand, within BBR_RS11715 at 383.794 kb on + strand, within BBR_RS11715 at 383.794 kb on + strand, within BBR_RS11715 at 383.802 kb on - strand, within BBR_RS11715 at 383.833 kb on + strand, within BBR_RS11715 at 383.835 kb on - strand, within BBR_RS11715 at 383.839 kb on + strand, within BBR_RS11715 at 383.839 kb on + strand, within BBR_RS11715 at 383.863 kb on + strand, within BBR_RS11715 at 383.905 kb on - strand, within BBR_RS11715 at 383.918 kb on + strand, within BBR_RS11715 at 383.918 kb on + strand, within BBR_RS11715 at 383.932 kb on + strand, within BBR_RS11715 at 383.932 kb on + strand, within BBR_RS11715 at 383.938 kb on + strand, within BBR_RS11715 at 383.938 kb on + strand, within BBR_RS11715 at 383.967 kb on + strand, within BBR_RS11715 at 383.999 kb on + strand, within BBR_RS11715 at 384.000 kb on + strand, within BBR_RS11715 at 384.000 kb on + strand, within BBR_RS11715 at 384.002 kb on - strand, within BBR_RS11715 at 384.014 kb on + strand, within BBR_RS11715 at 384.015 kb on + strand, within BBR_RS11715 at 384.020 kb on + strand, within BBR_RS11715 at 384.020 kb on + strand, within BBR_RS11715 at 384.028 kb on - strand, within BBR_RS11715 at 384.028 kb on - strand, within BBR_RS11715 at 384.030 kb on + strand, within BBR_RS11715 at 384.030 kb on + strand, within BBR_RS11715 at 384.030 kb on + strand, within BBR_RS11715 at 384.030 kb on + strand, within BBR_RS11715 at 384.030 kb on + strand, within BBR_RS11715 at 384.038 kb on - strand, within BBR_RS11715 at 384.108 kb on - strand, within BBR_RS11715 at 384.108 kb on - strand, within BBR_RS11715 at 384.119 kb on + strand, within BBR_RS11715 at 384.119 kb on + strand, within BBR_RS11715 at 384.127 kb on - strand, within BBR_RS11715 at 384.259 kb on + strand, within BBR_RS11715 at 384.259 kb on + strand, within BBR_RS11715 at 384.282 kb on - strand, within BBR_RS11715 at 384.282 kb on - strand, within BBR_RS11715 at 384.294 kb on + strand, within BBR_RS11715 at 384.294 kb on + strand, within BBR_RS11715 at 384.312 kb on - strand, within BBR_RS11715 at 384.314 kb on + strand, within BBR_RS11715 at 384.317 kb on + strand, within BBR_RS11715 at 384.322 kb on + strand, within BBR_RS11715 at 384.322 kb on + strand, within BBR_RS11715 at 384.322 kb on + strand, within BBR_RS11715 at 384.322 kb on + strand, within BBR_RS11715 at 384.322 kb on + strand, within BBR_RS11715 at 384.322 kb on + strand, within BBR_RS11715 at 384.322 kb on + strand, within BBR_RS11715 at 384.322 kb on + strand, within BBR_RS11715 at 384.322 kb on + strand, within BBR_RS11715 at 384.330 kb on - strand, within BBR_RS11715 at 384.330 kb on - strand, within BBR_RS11715 at 384.338 kb on - strand, within BBR_RS11715 at 384.342 kb on + strand, within BBR_RS11715 at 384.342 kb on + strand, within BBR_RS11715 at 384.361 kb on + strand, within BBR_RS11715 at 384.372 kb on + strand, within BBR_RS11715 at 384.385 kb on + strand, within BBR_RS11715 at 384.388 kb on - strand, within BBR_RS11715 at 384.400 kb on + strand, within BBR_RS11715 at 384.414 kb on + strand, within BBR_RS11715 at 384.422 kb on - strand, within BBR_RS11715 at 384.429 kb on + strand, within BBR_RS11715 at 384.429 kb on + strand, within BBR_RS11715 at 384.431 kb on + strand, within BBR_RS11715 at 384.437 kb on - strand at 384.437 kb on - strand at 384.439 kb on - strand at 384.439 kb on - strand at 384.474 kb on - strand at 384.492 kb on + strand at 384.493 kb on - strand at 384.495 kb on + strand at 384.495 kb on + strand at 384.497 kb on + strand at 384.500 kb on - strand at 384.500 kb on - strand at 384.502 kb on + strand at 384.597 kb on + strand, within BBR_RS11720 at 384.614 kb on + strand, within BBR_RS11720 at 384.645 kb on - strand, within BBR_RS11720 at 384.662 kb on - strand, within BBR_RS11720 at 384.698 kb on + strand, within BBR_RS11720 at 384.698 kb on + strand, within BBR_RS11720 at 384.698 kb on + strand, within BBR_RS11720 at 384.698 kb on + strand, within BBR_RS11720 at 384.698 kb on + strand, within BBR_RS11720 at 384.727 kb on - strand, within BBR_RS11720 at 384.739 kb on + strand, within BBR_RS11720 at 384.739 kb on + strand, within BBR_RS11720 at 384.746 kb on + strand, within BBR_RS11720 at 384.792 kb on + strand, within BBR_RS11720 at 384.802 kb on + strand, within BBR_RS11720 at 384.854 kb on + strand at 384.854 kb on + strand at 384.854 kb on + strand at 384.861 kb on + strand at 384.873 kb on - strand at 384.875 kb on + strand at 384.875 kb on + strand at 384.956 kb on + strand at 384.956 kb on + strand at 384.964 kb on - strand at 384.966 kb on + strand at 384.966 kb on + strand at 384.966 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Recovery broth with Tiamulin 2e-04 mM remove 383,551 + +0.5 383,604 + BBR_RS11715 0.11 -0.1 383,610 + BBR_RS11715 0.11 -0.7 383,636 - BBR_RS11715 0.14 -0.0 383,638 + BBR_RS11715 0.14 -0.0 383,638 + BBR_RS11715 0.14 -0.5 383,686 - BBR_RS11715 0.19 +0.3 383,699 + BBR_RS11715 0.20 -0.1 383,707 + BBR_RS11715 0.21 -0.1 383,707 + BBR_RS11715 0.21 -0.2 383,707 + BBR_RS11715 0.21 +0.5 383,707 + BBR_RS11715 0.21 -1.5 383,715 - BBR_RS11715 0.21 -0.2 383,715 - BBR_RS11715 0.21 -2.3 383,715 - BBR_RS11715 0.21 -0.7 383,728 + BBR_RS11715 0.23 +0.3 383,741 + BBR_RS11715 0.24 -0.7 383,762 + BBR_RS11715 0.26 -1.4 383,790 + BBR_RS11715 0.28 -0.3 383,794 + BBR_RS11715 0.29 +0.5 383,794 + BBR_RS11715 0.29 +0.8 383,794 + BBR_RS11715 0.29 -0.2 383,802 - BBR_RS11715 0.30 +0.8 383,833 + BBR_RS11715 0.33 +0.3 383,835 - BBR_RS11715 0.33 -1.0 383,839 + BBR_RS11715 0.33 +0.2 383,839 + BBR_RS11715 0.33 -0.1 383,863 + BBR_RS11715 0.35 -1.5 383,905 - BBR_RS11715 0.39 -1.7 383,918 + BBR_RS11715 0.41 +0.1 383,918 + BBR_RS11715 0.41 +0.0 383,932 + BBR_RS11715 0.42 +0.9 383,932 + BBR_RS11715 0.42 -0.8 383,938 + BBR_RS11715 0.43 +0.7 383,938 + BBR_RS11715 0.43 +0.6 383,967 + BBR_RS11715 0.45 -0.3 383,999 + BBR_RS11715 0.48 +0.3 384,000 + BBR_RS11715 0.49 -0.0 384,000 + BBR_RS11715 0.49 -0.6 384,002 - BBR_RS11715 0.49 -0.5 384,014 + BBR_RS11715 0.50 +0.4 384,015 + BBR_RS11715 0.50 +0.1 384,020 + BBR_RS11715 0.50 +0.1 384,020 + BBR_RS11715 0.50 +0.6 384,028 - BBR_RS11715 0.51 -2.0 384,028 - BBR_RS11715 0.51 +0.3 384,030 + BBR_RS11715 0.51 +0.6 384,030 + BBR_RS11715 0.51 +1.5 384,030 + BBR_RS11715 0.51 -0.4 384,030 + BBR_RS11715 0.51 -0.3 384,030 + BBR_RS11715 0.51 -1.3 384,038 - BBR_RS11715 0.52 -0.6 384,108 - BBR_RS11715 0.59 +0.4 384,108 - BBR_RS11715 0.59 -0.2 384,119 + BBR_RS11715 0.60 -0.4 384,119 + BBR_RS11715 0.60 -0.6 384,127 - BBR_RS11715 0.61 +0.9 384,259 + BBR_RS11715 0.73 +0.0 384,259 + BBR_RS11715 0.73 +0.1 384,282 - BBR_RS11715 0.75 +0.4 384,282 - BBR_RS11715 0.75 +0.4 384,294 + BBR_RS11715 0.77 -0.1 384,294 + BBR_RS11715 0.77 -0.1 384,312 - BBR_RS11715 0.78 +0.1 384,314 + BBR_RS11715 0.79 +0.4 384,317 + BBR_RS11715 0.79 -0.3 384,322 + BBR_RS11715 0.79 +0.1 384,322 + BBR_RS11715 0.79 +0.5 384,322 + BBR_RS11715 0.79 -0.5 384,322 + BBR_RS11715 0.79 +0.4 384,322 + BBR_RS11715 0.79 +0.1 384,322 + BBR_RS11715 0.79 +0.4 384,322 + BBR_RS11715 0.79 +0.3 384,322 + BBR_RS11715 0.79 +1.1 384,322 + BBR_RS11715 0.79 +0.5 384,330 - BBR_RS11715 0.80 -0.1 384,330 - BBR_RS11715 0.80 +1.0 384,338 - BBR_RS11715 0.81 -0.8 384,342 + BBR_RS11715 0.81 -0.5 384,342 + BBR_RS11715 0.81 +0.6 384,361 + BBR_RS11715 0.83 -0.1 384,372 + BBR_RS11715 0.84 +0.7 384,385 + BBR_RS11715 0.85 +0.5 384,388 - BBR_RS11715 0.86 -1.0 384,400 + BBR_RS11715 0.87 +0.4 384,414 + BBR_RS11715 0.88 -0.3 384,422 - BBR_RS11715 0.89 +0.9 384,429 + BBR_RS11715 0.89 +0.2 384,429 + BBR_RS11715 0.89 +1.3 384,431 + BBR_RS11715 0.90 -0.1 384,437 - -0.8 384,437 - -1.3 384,439 - -0.4 384,439 - +0.3 384,474 - -0.8 384,492 + +0.3 384,493 - +0.9 384,495 + +0.5 384,495 + +0.2 384,497 + +0.2 384,500 - -0.2 384,500 - +0.5 384,502 + +0.5 384,597 + BBR_RS11720 0.17 +3.0 384,614 + BBR_RS11720 0.22 -0.9 384,645 - BBR_RS11720 0.32 +0.7 384,662 - BBR_RS11720 0.37 +0.7 384,698 + BBR_RS11720 0.49 -2.8 384,698 + BBR_RS11720 0.49 -1.8 384,698 + BBR_RS11720 0.49 -3.1 384,698 + BBR_RS11720 0.49 -1.8 384,698 + BBR_RS11720 0.49 -0.3 384,727 - BBR_RS11720 0.58 -0.3 384,739 + BBR_RS11720 0.62 -1.2 384,739 + BBR_RS11720 0.62 -2.1 384,746 + BBR_RS11720 0.64 -1.9 384,792 + BBR_RS11720 0.78 +1.0 384,802 + BBR_RS11720 0.82 -0.3 384,854 + +0.6 384,854 + +0.5 384,854 + +0.7 384,861 + -0.4 384,873 - +0.3 384,875 + +0.3 384,875 + -1.2 384,956 + +0.2 384,956 + -0.6 384,964 - -1.3 384,966 + -0.1 384,966 + +0.9 384,966 + +0.3
Or see this region's nucleotide sequence