Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS10905

Experiment: Recovery broth with Tiamulin 2e-04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS10900 and BBR_RS10905 overlap by 1 nucleotidesBBR_RS10905 and BBR_RS10910 are separated by 178 nucleotides BBR_RS10900: BBR_RS10900 - molecular chaperone DnaK, at 188,855 to 190,735 _RS10900 BBR_RS10905: BBR_RS10905 - nucleotide exchange factor GrpE, at 190,735 to 191,418 _RS10905 BBR_RS10910: BBR_RS10910 - molecular chaperone DnaJ, at 191,597 to 192,610 _RS10910 Position (kb) 190 191 192Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 190.516 kb on + strand, within BBR_RS10900at 190.516 kb on + strand, within BBR_RS10900at 190.516 kb on + strand, within BBR_RS10900at 190.522 kb on + strand, within BBR_RS10900at 190.530 kb on + strand, within BBR_RS10900at 190.540 kb on + strand, within BBR_RS10900at 190.540 kb on + strand, within BBR_RS10900at 190.549 kb on + strandat 190.555 kb on + strandat 190.555 kb on + strandat 190.569 kb on + strandat 190.599 kb on + strandat 190.599 kb on + strandat 190.611 kb on + strandat 190.611 kb on + strandat 190.815 kb on + strand, within BBR_RS10905at 190.815 kb on + strand, within BBR_RS10905at 190.845 kb on + strand, within BBR_RS10905at 190.845 kb on + strand, within BBR_RS10905at 190.845 kb on + strand, within BBR_RS10905at 190.860 kb on + strand, within BBR_RS10905at 190.860 kb on + strand, within BBR_RS10905at 190.998 kb on + strand, within BBR_RS10905at 191.022 kb on + strand, within BBR_RS10905at 191.022 kb on + strand, within BBR_RS10905at 191.022 kb on + strand, within BBR_RS10905at 191.022 kb on + strand, within BBR_RS10905at 191.108 kb on + strand, within BBR_RS10905at 191.305 kb on + strand, within BBR_RS10905at 191.390 kb on + strandat 191.395 kb on + strandat 191.422 kb on + strandat 191.425 kb on - strandat 191.425 kb on - strandat 191.433 kb on + strandat 191.472 kb on - strandat 191.478 kb on + strandat 191.478 kb on + strandat 191.484 kb on + strandat 191.488 kb on + strandat 191.488 kb on + strandat 191.488 kb on + strandat 191.488 kb on + strandat 191.488 kb on + strandat 191.496 kb on - strandat 191.496 kb on - strandat 191.496 kb on - strandat 191.499 kb on + strandat 191.499 kb on + strandat 191.507 kb on - strandat 191.519 kb on - strandat 191.527 kb on + strandat 191.535 kb on - strandat 191.543 kb on - strandat 191.545 kb on + strandat 191.545 kb on + strandat 191.545 kb on + strandat 191.545 kb on + strandat 191.545 kb on + strandat 191.553 kb on - strandat 191.553 kb on - strandat 191.567 kb on + strandat 191.587 kb on + strandat 191.603 kb on + strandat 191.608 kb on - strandat 191.619 kb on + strandat 191.626 kb on + strandat 191.626 kb on + strandat 191.636 kb on + strandat 191.647 kb on + strandat 191.647 kb on + strandat 191.647 kb on + strandat 191.655 kb on - strandat 191.655 kb on - strandat 191.664 kb on - strandat 191.701 kb on + strand, within BBR_RS10910at 191.704 kb on + strand, within BBR_RS10910at 191.704 kb on + strand, within BBR_RS10910at 191.704 kb on + strand, within BBR_RS10910at 191.704 kb on + strand, within BBR_RS10910at 191.704 kb on + strand, within BBR_RS10910at 191.704 kb on + strand, within BBR_RS10910at 191.709 kb on + strand, within BBR_RS10910at 191.709 kb on + strand, within BBR_RS10910at 191.709 kb on + strand, within BBR_RS10910at 191.710 kb on + strand, within BBR_RS10910at 191.712 kb on - strand, within BBR_RS10910at 191.719 kb on + strand, within BBR_RS10910at 191.746 kb on + strand, within BBR_RS10910at 191.757 kb on + strand, within BBR_RS10910at 191.765 kb on + strand, within BBR_RS10910at 191.777 kb on - strand, within BBR_RS10910at 191.782 kb on - strand, within BBR_RS10910at 191.784 kb on + strand, within BBR_RS10910at 191.825 kb on + strand, within BBR_RS10910at 191.829 kb on - strand, within BBR_RS10910at 191.861 kb on + strand, within BBR_RS10910at 191.877 kb on + strand, within BBR_RS10910at 191.886 kb on + strand, within BBR_RS10910at 191.896 kb on + strand, within BBR_RS10910at 191.925 kb on - strand, within BBR_RS10910at 191.970 kb on + strand, within BBR_RS10910at 191.970 kb on + strand, within BBR_RS10910at 191.971 kb on + strand, within BBR_RS10910at 191.998 kb on + strand, within BBR_RS10910at 192.014 kb on + strand, within BBR_RS10910at 192.016 kb on + strand, within BBR_RS10910at 192.043 kb on + strand, within BBR_RS10910at 192.044 kb on + strand, within BBR_RS10910at 192.049 kb on + strand, within BBR_RS10910at 192.049 kb on + strand, within BBR_RS10910at 192.049 kb on + strand, within BBR_RS10910at 192.049 kb on + strand, within BBR_RS10910at 192.057 kb on - strand, within BBR_RS10910at 192.069 kb on + strand, within BBR_RS10910at 192.080 kb on + strand, within BBR_RS10910at 192.104 kb on + strand, within BBR_RS10910at 192.106 kb on + strand, within BBR_RS10910at 192.123 kb on + strand, within BBR_RS10910at 192.133 kb on + strand, within BBR_RS10910at 192.142 kb on + strand, within BBR_RS10910at 192.142 kb on + strand, within BBR_RS10910at 192.142 kb on + strand, within BBR_RS10910at 192.148 kb on + strand, within BBR_RS10910at 192.160 kb on + strand, within BBR_RS10910at 192.184 kb on + strand, within BBR_RS10910at 192.184 kb on + strand, within BBR_RS10910at 192.192 kb on - strand, within BBR_RS10910at 192.192 kb on - strand, within BBR_RS10910at 192.192 kb on - strand, within BBR_RS10910at 192.192 kb on - strand, within BBR_RS10910at 192.226 kb on + strand, within BBR_RS10910at 192.226 kb on + strand, within BBR_RS10910at 192.244 kb on + strand, within BBR_RS10910at 192.252 kb on - strand, within BBR_RS10910at 192.330 kb on + strand, within BBR_RS10910at 192.341 kb on + strand, within BBR_RS10910at 192.341 kb on + strand, within BBR_RS10910at 192.341 kb on + strand, within BBR_RS10910at 192.341 kb on + strand, within BBR_RS10910at 192.355 kb on + strand, within BBR_RS10910at 192.360 kb on + strand, within BBR_RS10910at 192.360 kb on + strand, within BBR_RS10910at 192.360 kb on + strand, within BBR_RS10910at 192.360 kb on + strand, within BBR_RS10910at 192.364 kb on + strand, within BBR_RS10910at 192.365 kb on + strand, within BBR_RS10910at 192.368 kb on - strand, within BBR_RS10910at 192.368 kb on - strand, within BBR_RS10910at 192.368 kb on - strand, within BBR_RS10910at 192.388 kb on + strand, within BBR_RS10910at 192.388 kb on + strand, within BBR_RS10910at 192.388 kb on + strand, within BBR_RS10910at 192.388 kb on + strand, within BBR_RS10910at 192.388 kb on + strand, within BBR_RS10910at 192.388 kb on + strand, within BBR_RS10910at 192.388 kb on + strand, within BBR_RS10910at 192.400 kb on + strand, within BBR_RS10910

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Tiamulin 2e-04 mM
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190,516 + BBR_RS10900 0.88 +3.1
190,516 + BBR_RS10900 0.88 +0.5
190,516 + BBR_RS10900 0.88 -0.1
190,522 + BBR_RS10900 0.89 +1.5
190,530 + BBR_RS10900 0.89 +1.5
190,540 + BBR_RS10900 0.90 +3.1
190,540 + BBR_RS10900 0.90 +2.1
190,549 + +3.1
190,555 + -0.6
190,555 + -0.1
190,569 + +0.1
190,599 + +2.1
190,599 + -1.1
190,611 + +3.1
190,611 + -0.4
190,815 + BBR_RS10905 0.12 -0.4
190,815 + BBR_RS10905 0.12 -0.2
190,845 + BBR_RS10905 0.16 -0.8
190,845 + BBR_RS10905 0.16 +0.7
190,845 + BBR_RS10905 0.16 -1.1
190,860 + BBR_RS10905 0.18 -0.0
190,860 + BBR_RS10905 0.18 -0.4
190,998 + BBR_RS10905 0.38 +0.0
191,022 + BBR_RS10905 0.42 -2.0
191,022 + BBR_RS10905 0.42 +0.1
191,022 + BBR_RS10905 0.42 -1.4
191,022 + BBR_RS10905 0.42 +0.7
191,108 + BBR_RS10905 0.55 +2.1
191,305 + BBR_RS10905 0.83 -1.0
191,390 + -0.6
191,395 + +3.1
191,422 + +0.8
191,425 - -0.5
191,425 - +0.3
191,433 + +0.8
191,472 - -1.8
191,478 + -0.4
191,478 + +0.3
191,484 + -1.5
191,488 + -0.5
191,488 + -0.8
191,488 + -1.0
191,488 + +0.0
191,488 + -0.6
191,496 - -0.9
191,496 - -0.2
191,496 - -2.3
191,499 + -0.2
191,499 + +1.5
191,507 - +0.8
191,519 - -1.4
191,527 + +0.0
191,535 - -2.1
191,543 - -0.0
191,545 + -0.0
191,545 + -0.2
191,545 + +0.2
191,545 + +0.1
191,545 + -0.4
191,553 - +0.9
191,553 - -0.3
191,567 + -0.1
191,587 + -0.7
191,603 + -1.3
191,608 - -0.5
191,619 + +0.7
191,626 + +0.8
191,626 + -0.7
191,636 + -1.0
191,647 + -1.2
191,647 + -0.2
191,647 + -1.6
191,655 - +0.5
191,655 - +3.1
191,664 - +0.9
191,701 + BBR_RS10910 0.10 +0.4
191,704 + BBR_RS10910 0.11 +0.5
191,704 + BBR_RS10910 0.11 +0.0
191,704 + BBR_RS10910 0.11 +0.6
191,704 + BBR_RS10910 0.11 +0.8
191,704 + BBR_RS10910 0.11 +3.1
191,704 + BBR_RS10910 0.11 -0.4
191,709 + BBR_RS10910 0.11 +0.3
191,709 + BBR_RS10910 0.11 -2.1
191,709 + BBR_RS10910 0.11 -0.6
191,710 + BBR_RS10910 0.11 +0.2
191,712 - BBR_RS10910 0.11 +1.5
191,719 + BBR_RS10910 0.12 -0.0
191,746 + BBR_RS10910 0.15 +0.1
191,757 + BBR_RS10910 0.16 -0.6
191,765 + BBR_RS10910 0.17 -0.3
191,777 - BBR_RS10910 0.18 +0.5
191,782 - BBR_RS10910 0.18 +1.5
191,784 + BBR_RS10910 0.18 +1.5
191,825 + BBR_RS10910 0.22 +1.7
191,829 - BBR_RS10910 0.23 +1.9
191,861 + BBR_RS10910 0.26 +0.3
191,877 + BBR_RS10910 0.28 +0.6
191,886 + BBR_RS10910 0.29 -0.1
191,896 + BBR_RS10910 0.29 +0.1
191,925 - BBR_RS10910 0.32 +3.1
191,970 + BBR_RS10910 0.37 -1.7
191,970 + BBR_RS10910 0.37 +0.5
191,971 + BBR_RS10910 0.37 -1.0
191,998 + BBR_RS10910 0.40 -0.0
192,014 + BBR_RS10910 0.41 +0.8
192,016 + BBR_RS10910 0.41 +1.0
192,043 + BBR_RS10910 0.44 -0.8
192,044 + BBR_RS10910 0.44 -0.5
192,049 + BBR_RS10910 0.45 +0.1
192,049 + BBR_RS10910 0.45 +0.7
192,049 + BBR_RS10910 0.45 -1.3
192,049 + BBR_RS10910 0.45 -1.5
192,057 - BBR_RS10910 0.45 +0.2
192,069 + BBR_RS10910 0.47 +2.1
192,080 + BBR_RS10910 0.48 -0.3
192,104 + BBR_RS10910 0.50 -1.6
192,106 + BBR_RS10910 0.50 +0.3
192,123 + BBR_RS10910 0.52 +0.3
192,133 + BBR_RS10910 0.53 +1.1
192,142 + BBR_RS10910 0.54 +0.1
192,142 + BBR_RS10910 0.54 -1.4
192,142 + BBR_RS10910 0.54 +0.4
192,148 + BBR_RS10910 0.54 -1.6
192,160 + BBR_RS10910 0.56 +1.5
192,184 + BBR_RS10910 0.58 +1.5
192,184 + BBR_RS10910 0.58 -0.3
192,192 - BBR_RS10910 0.59 -1.1
192,192 - BBR_RS10910 0.59 -1.9
192,192 - BBR_RS10910 0.59 -0.8
192,192 - BBR_RS10910 0.59 +0.2
192,226 + BBR_RS10910 0.62 -0.2
192,226 + BBR_RS10910 0.62 -0.4
192,244 + BBR_RS10910 0.64 -0.8
192,252 - BBR_RS10910 0.65 +0.1
192,330 + BBR_RS10910 0.72 +0.2
192,341 + BBR_RS10910 0.73 +0.3
192,341 + BBR_RS10910 0.73 -0.3
192,341 + BBR_RS10910 0.73 -0.5
192,341 + BBR_RS10910 0.73 -0.2
192,355 + BBR_RS10910 0.75 +0.8
192,360 + BBR_RS10910 0.75 -0.1
192,360 + BBR_RS10910 0.75 +0.2
192,360 + BBR_RS10910 0.75 +0.7
192,360 + BBR_RS10910 0.75 +0.9
192,364 + BBR_RS10910 0.76 +0.3
192,365 + BBR_RS10910 0.76 -1.4
192,368 - BBR_RS10910 0.76 +0.7
192,368 - BBR_RS10910 0.76 +0.1
192,368 - BBR_RS10910 0.76 +1.8
192,388 + BBR_RS10910 0.78 -2.5
192,388 + BBR_RS10910 0.78 -0.0
192,388 + BBR_RS10910 0.78 -1.5
192,388 + BBR_RS10910 0.78 +0.1
192,388 + BBR_RS10910 0.78 +0.4
192,388 + BBR_RS10910 0.78 -1.0
192,388 + BBR_RS10910 0.78 +0.5
192,400 + BBR_RS10910 0.79 -3.1

Or see this region's nucleotide sequence