Experiment: Nalidixic 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS20855 and ABZR86_RS20860 are separated by 187 nucleotides ABZR86_RS20860 and ABZR86_RS20865 are separated by 181 nucleotides ABZR86_RS20865 and ABZR86_RS20870 are separated by 35 nucleotides
ABZR86_RS20855: ABZR86_RS20855 - autotransporter domain-containing protein, at 141,859 to 143,103
_RS20855
ABZR86_RS20860: ABZR86_RS20860 - transcriptional regulator GcvA, at 143,291 to 144,202
_RS20860
ABZR86_RS20865: ABZR86_RS20865 - SDR family oxidoreductase, at 144,384 to 145,157
_RS20865
ABZR86_RS20870: ABZR86_RS20870 - alcohol dehydrogenase catalytic domain-containing protein, at 145,193 to 146,230
_RS20870
Position (kb) 143
144
145 Strain fitness (log2 ratio) -1
0
1
2 at 142.336 kb on - strand, within ABZR86_RS20855 at 142.336 kb on - strand, within ABZR86_RS20855 at 142.336 kb on - strand, within ABZR86_RS20855 at 142.343 kb on + strand, within ABZR86_RS20855 at 142.343 kb on + strand, within ABZR86_RS20855 at 142.344 kb on - strand, within ABZR86_RS20855 at 142.344 kb on - strand, within ABZR86_RS20855 at 142.344 kb on - strand, within ABZR86_RS20855 at 142.344 kb on - strand, within ABZR86_RS20855 at 142.344 kb on - strand, within ABZR86_RS20855 at 142.346 kb on + strand, within ABZR86_RS20855 at 142.347 kb on - strand, within ABZR86_RS20855 at 142.422 kb on - strand, within ABZR86_RS20855 at 142.422 kb on - strand, within ABZR86_RS20855 at 142.422 kb on - strand, within ABZR86_RS20855 at 142.443 kb on + strand, within ABZR86_RS20855 at 142.443 kb on + strand, within ABZR86_RS20855 at 142.443 kb on + strand, within ABZR86_RS20855 at 142.443 kb on + strand, within ABZR86_RS20855 at 142.478 kb on + strand, within ABZR86_RS20855 at 142.478 kb on + strand, within ABZR86_RS20855 at 142.479 kb on - strand, within ABZR86_RS20855 at 142.479 kb on - strand, within ABZR86_RS20855 at 142.542 kb on - strand, within ABZR86_RS20855 at 142.542 kb on - strand, within ABZR86_RS20855 at 143.148 kb on - strand at 143.169 kb on + strand at 143.170 kb on - strand at 143.234 kb on + strand at 143.234 kb on + strand at 143.234 kb on + strand at 143.234 kb on + strand at 143.234 kb on + strand at 143.235 kb on - strand at 143.241 kb on - strand at 143.241 kb on - strand at 143.293 kb on - strand at 143.364 kb on + strand at 143.364 kb on - strand at 143.377 kb on - strand at 143.377 kb on - strand at 143.377 kb on - strand at 143.377 kb on - strand at 143.502 kb on - strand, within ABZR86_RS20860 at 143.630 kb on + strand, within ABZR86_RS20860 at 143.701 kb on - strand, within ABZR86_RS20860 at 144.211 kb on - strand at 144.282 kb on + strand at 144.283 kb on - strand at 144.288 kb on + strand at 144.288 kb on + strand at 144.288 kb on + strand at 144.289 kb on - strand at 144.292 kb on + strand at 144.293 kb on - strand at 144.331 kb on - strand at 144.711 kb on + strand, within ABZR86_RS20865 at 144.711 kb on + strand, within ABZR86_RS20865 at 144.711 kb on + strand, within ABZR86_RS20865 at 144.712 kb on - strand, within ABZR86_RS20865 at 144.712 kb on - strand, within ABZR86_RS20865 at 144.712 kb on - strand, within ABZR86_RS20865 at 144.712 kb on - strand, within ABZR86_RS20865 at 144.852 kb on + strand, within ABZR86_RS20865 at 144.852 kb on + strand, within ABZR86_RS20865 at 144.921 kb on - strand, within ABZR86_RS20865 at 144.966 kb on + strand, within ABZR86_RS20865 at 144.966 kb on + strand, within ABZR86_RS20865 at 144.967 kb on - strand, within ABZR86_RS20865 at 144.967 kb on - strand, within ABZR86_RS20865
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.04 mg/ml remove 142,336 - ABZR86_RS20855 0.38 +0.0 142,336 - ABZR86_RS20855 0.38 +0.7 142,336 - ABZR86_RS20855 0.38 -1.2 142,343 + ABZR86_RS20855 0.39 +0.2 142,343 + ABZR86_RS20855 0.39 +0.3 142,344 - ABZR86_RS20855 0.39 -0.8 142,344 - ABZR86_RS20855 0.39 -0.3 142,344 - ABZR86_RS20855 0.39 +0.3 142,344 - ABZR86_RS20855 0.39 -0.6 142,344 - ABZR86_RS20855 0.39 +0.3 142,346 + ABZR86_RS20855 0.39 +0.1 142,347 - ABZR86_RS20855 0.39 +0.4 142,422 - ABZR86_RS20855 0.45 +0.5 142,422 - ABZR86_RS20855 0.45 -1.0 142,422 - ABZR86_RS20855 0.45 -1.1 142,443 + ABZR86_RS20855 0.47 -0.3 142,443 + ABZR86_RS20855 0.47 +0.0 142,443 + ABZR86_RS20855 0.47 +0.2 142,443 + ABZR86_RS20855 0.47 +0.3 142,478 + ABZR86_RS20855 0.50 +1.7 142,478 + ABZR86_RS20855 0.50 -0.8 142,479 - ABZR86_RS20855 0.50 -0.1 142,479 - ABZR86_RS20855 0.50 +0.0 142,542 - ABZR86_RS20855 0.55 +0.1 142,542 - ABZR86_RS20855 0.55 +0.6 143,148 - +0.2 143,169 + -0.3 143,170 - -0.7 143,234 + -0.1 143,234 + -0.1 143,234 + +0.5 143,234 + +0.5 143,234 + +0.4 143,235 - -0.5 143,241 - -0.0 143,241 - -0.3 143,293 - +0.6 143,364 + -0.1 143,364 - -1.4 143,377 - -0.9 143,377 - +0.1 143,377 - +0.0 143,377 - +0.4 143,502 - ABZR86_RS20860 0.23 +0.6 143,630 + ABZR86_RS20860 0.37 +2.0 143,701 - ABZR86_RS20860 0.45 -0.7 144,211 - +0.5 144,282 + -0.5 144,283 - -0.4 144,288 + -0.1 144,288 + +0.0 144,288 + +0.2 144,289 - -0.5 144,292 + -0.2 144,293 - +0.9 144,331 - +0.1 144,711 + ABZR86_RS20865 0.42 -0.8 144,711 + ABZR86_RS20865 0.42 -0.1 144,711 + ABZR86_RS20865 0.42 +1.2 144,712 - ABZR86_RS20865 0.42 +0.9 144,712 - ABZR86_RS20865 0.42 +0.2 144,712 - ABZR86_RS20865 0.42 +0.1 144,712 - ABZR86_RS20865 0.42 -0.7 144,852 + ABZR86_RS20865 0.60 +0.6 144,852 + ABZR86_RS20865 0.60 -0.7 144,921 - ABZR86_RS20865 0.69 -0.1 144,966 + ABZR86_RS20865 0.75 +0.1 144,966 + ABZR86_RS20865 0.75 +0.4 144,967 - ABZR86_RS20865 0.75 -0.4 144,967 - ABZR86_RS20865 0.75 +0.4
Or see this region's nucleotide sequence