Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS18425

Experiment: Nalidixic 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS18415 and ABZR86_RS18420 are separated by 53 nucleotidesABZR86_RS18420 and ABZR86_RS18425 are separated by 64 nucleotidesABZR86_RS18425 and ABZR86_RS18430 are separated by 2 nucleotidesABZR86_RS18430 and ABZR86_RS18435 are separated by 15 nucleotidesABZR86_RS18435 and ABZR86_RS18440 are separated by 105 nucleotides ABZR86_RS18415: ABZR86_RS18415 - tryptophan--tRNA ligase, at 103,685 to 105,055 _RS18415 ABZR86_RS18420: ABZR86_RS18420 - hypothetical protein, at 105,109 to 105,441 _RS18420 ABZR86_RS18425: ABZR86_RS18425 - type II toxin-antitoxin system HigB family toxin, at 105,506 to 105,808 _RS18425 ABZR86_RS18430: ABZR86_RS18430 - type II toxin-antitoxin system HigA family antitoxin, at 105,811 to 106,173 _RS18430 ABZR86_RS18435: ABZR86_RS18435 - VOC family protein, at 106,189 to 106,572 _RS18435 ABZR86_RS18440: ABZR86_RS18440 - dihydrolipoamide acetyltransferase family protein, at 106,678 to 108,063 _RS18440 Position (kb) 105 106Strain fitness (log2 ratio) -1 0 1 2 3 4at 105.115 kb on + strandat 105.116 kb on - strandat 105.167 kb on - strand, within ABZR86_RS18420at 105.167 kb on - strand, within ABZR86_RS18420at 105.176 kb on - strand, within ABZR86_RS18420at 105.355 kb on + strand, within ABZR86_RS18420at 105.355 kb on + strand, within ABZR86_RS18420at 105.355 kb on + strand, within ABZR86_RS18420at 105.494 kb on + strandat 105.531 kb on + strandat 105.638 kb on + strand, within ABZR86_RS18425at 105.638 kb on + strand, within ABZR86_RS18425at 105.638 kb on + strand, within ABZR86_RS18425at 105.638 kb on + strand, within ABZR86_RS18425at 105.638 kb on + strand, within ABZR86_RS18425at 105.638 kb on + strand, within ABZR86_RS18425at 105.638 kb on + strand, within ABZR86_RS18425at 105.638 kb on + strand, within ABZR86_RS18425at 105.639 kb on - strand, within ABZR86_RS18425at 105.639 kb on - strand, within ABZR86_RS18425at 105.639 kb on - strand, within ABZR86_RS18425at 105.682 kb on + strand, within ABZR86_RS18425at 105.698 kb on + strand, within ABZR86_RS18425at 105.698 kb on + strand, within ABZR86_RS18425at 105.699 kb on - strand, within ABZR86_RS18425at 105.699 kb on - strand, within ABZR86_RS18425at 105.699 kb on - strand, within ABZR86_RS18425at 105.699 kb on - strand, within ABZR86_RS18425at 105.740 kb on + strand, within ABZR86_RS18425at 105.740 kb on + strand, within ABZR86_RS18425at 105.741 kb on - strand, within ABZR86_RS18425at 105.741 kb on - strand, within ABZR86_RS18425at 105.771 kb on - strand, within ABZR86_RS18425at 105.804 kb on + strandat 105.804 kb on + strandat 105.804 kb on + strandat 105.804 kb on + strandat 105.804 kb on + strandat 105.804 kb on + strandat 105.804 kb on + strandat 105.804 kb on + strandat 106.075 kb on + strand, within ABZR86_RS18430at 106.075 kb on + strand, within ABZR86_RS18430at 106.076 kb on - strand, within ABZR86_RS18430at 106.161 kb on + strandat 106.172 kb on - strandat 106.442 kb on + strand, within ABZR86_RS18435at 106.442 kb on + strand, within ABZR86_RS18435at 106.443 kb on - strand, within ABZR86_RS18435at 106.466 kb on + strand, within ABZR86_RS18435at 106.466 kb on + strand, within ABZR86_RS18435at 106.466 kb on + strand, within ABZR86_RS18435at 106.467 kb on - strand, within ABZR86_RS18435at 106.467 kb on - strand, within ABZR86_RS18435at 106.606 kb on + strandat 106.606 kb on + strandat 106.607 kb on - strandat 106.607 kb on - strandat 106.608 kb on + strandat 106.608 kb on + strandat 106.608 kb on + strandat 106.608 kb on + strandat 106.608 kb on + strandat 106.608 kb on + strandat 106.609 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.04 mg/ml
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105,115 + -0.0
105,116 - -0.4
105,167 - ABZR86_RS18420 0.17 -0.2
105,167 - ABZR86_RS18420 0.17 -0.2
105,176 - ABZR86_RS18420 0.20 -0.2
105,355 + ABZR86_RS18420 0.74 +0.0
105,355 + ABZR86_RS18420 0.74 +0.8
105,355 + ABZR86_RS18420 0.74 -0.1
105,494 + -0.6
105,531 + -0.3
105,638 + ABZR86_RS18425 0.44 -1.0
105,638 + ABZR86_RS18425 0.44 -0.1
105,638 + ABZR86_RS18425 0.44 -0.6
105,638 + ABZR86_RS18425 0.44 -0.6
105,638 + ABZR86_RS18425 0.44 +0.3
105,638 + ABZR86_RS18425 0.44 +0.5
105,638 + ABZR86_RS18425 0.44 -0.1
105,638 + ABZR86_RS18425 0.44 -0.8
105,639 - ABZR86_RS18425 0.44 -1.0
105,639 - ABZR86_RS18425 0.44 +0.1
105,639 - ABZR86_RS18425 0.44 -0.4
105,682 + ABZR86_RS18425 0.58 +0.5
105,698 + ABZR86_RS18425 0.63 -0.2
105,698 + ABZR86_RS18425 0.63 -0.0
105,699 - ABZR86_RS18425 0.64 +0.2
105,699 - ABZR86_RS18425 0.64 -0.1
105,699 - ABZR86_RS18425 0.64 -0.1
105,699 - ABZR86_RS18425 0.64 +0.3
105,740 + ABZR86_RS18425 0.77 -1.3
105,740 + ABZR86_RS18425 0.77 +0.4
105,741 - ABZR86_RS18425 0.78 -0.6
105,741 - ABZR86_RS18425 0.78 -0.4
105,771 - ABZR86_RS18425 0.87 -0.6
105,804 + -1.1
105,804 + +0.8
105,804 + -0.1
105,804 + -0.2
105,804 + +0.1
105,804 + -0.1
105,804 + -0.2
105,804 + -0.1
106,075 + ABZR86_RS18430 0.73 +0.4
106,075 + ABZR86_RS18430 0.73 -0.0
106,076 - ABZR86_RS18430 0.73 -0.5
106,161 + -0.6
106,172 - +0.5
106,442 + ABZR86_RS18435 0.66 +0.2
106,442 + ABZR86_RS18435 0.66 -1.4
106,443 - ABZR86_RS18435 0.66 -0.8
106,466 + ABZR86_RS18435 0.72 -1.0
106,466 + ABZR86_RS18435 0.72 -0.3
106,466 + ABZR86_RS18435 0.72 -0.9
106,467 - ABZR86_RS18435 0.72 -0.8
106,467 - ABZR86_RS18435 0.72 +0.8
106,606 + -0.7
106,606 + -0.3
106,607 - +0.2
106,607 - +4.5
106,608 + -0.4
106,608 + -0.3
106,608 + -0.5
106,608 + +0.6
106,608 + -1.1
106,608 + +0.3
106,609 - +0.2

Or see this region's nucleotide sequence