Experiment: Nalidixic 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS18285 and ABZR86_RS18290 are separated by 1 nucleotides ABZR86_RS18290 and ABZR86_RS18295 are separated by 76 nucleotides ABZR86_RS18295 and ABZR86_RS18300 are separated by 404 nucleotides
ABZR86_RS18285: ABZR86_RS18285 - efflux RND transporter permease subunit, at 73,924 to 77,067
_RS18285
ABZR86_RS18290: ABZR86_RS18290 - AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor, at 77,069 to 78,562
_RS18290
ABZR86_RS18295: ABZR86_RS18295 - MarR family transcriptional regulator, at 78,639 to 79,070
_RS18295
ABZR86_RS18300: ABZR86_RS18300 - lipase family protein, at 79,475 to 79,984
_RS18300
Position (kb) 77
78
79 Strain fitness (log2 ratio) -2
-1
0
1 at 76.189 kb on + strand, within ABZR86_RS18285 at 76.190 kb on - strand, within ABZR86_RS18285 at 76.190 kb on - strand, within ABZR86_RS18285 at 76.190 kb on - strand, within ABZR86_RS18285 at 76.285 kb on + strand, within ABZR86_RS18285 at 76.286 kb on - strand, within ABZR86_RS18285 at 76.549 kb on + strand, within ABZR86_RS18285 at 76.549 kb on + strand, within ABZR86_RS18285 at 76.549 kb on + strand, within ABZR86_RS18285 at 76.550 kb on - strand, within ABZR86_RS18285 at 76.551 kb on + strand, within ABZR86_RS18285 at 76.551 kb on + strand, within ABZR86_RS18285 at 76.551 kb on + strand, within ABZR86_RS18285 at 76.552 kb on - strand, within ABZR86_RS18285 at 76.552 kb on - strand, within ABZR86_RS18285 at 76.552 kb on - strand, within ABZR86_RS18285 at 76.552 kb on - strand, within ABZR86_RS18285 at 76.697 kb on - strand, within ABZR86_RS18285 at 77.069 kb on - strand at 77.069 kb on - strand at 77.069 kb on - strand at 77.069 kb on - strand at 77.069 kb on - strand at 77.145 kb on - strand at 77.465 kb on + strand, within ABZR86_RS18290 at 77.584 kb on + strand, within ABZR86_RS18290 at 77.615 kb on + strand, within ABZR86_RS18290 at 77.616 kb on - strand, within ABZR86_RS18290 at 77.682 kb on - strand, within ABZR86_RS18290 at 77.688 kb on - strand, within ABZR86_RS18290 at 77.790 kb on - strand, within ABZR86_RS18290 at 77.791 kb on + strand, within ABZR86_RS18290 at 77.792 kb on - strand, within ABZR86_RS18290 at 78.322 kb on + strand, within ABZR86_RS18290 at 78.323 kb on - strand, within ABZR86_RS18290 at 78.327 kb on - strand, within ABZR86_RS18290 at 78.368 kb on + strand, within ABZR86_RS18290 at 78.369 kb on - strand, within ABZR86_RS18290 at 78.402 kb on - strand, within ABZR86_RS18290 at 78.464 kb on + strand at 78.465 kb on - strand at 78.553 kb on - strand at 78.679 kb on + strand at 78.679 kb on + strand at 78.679 kb on + strand at 78.680 kb on - strand at 78.758 kb on + strand, within ABZR86_RS18295 at 78.759 kb on - strand, within ABZR86_RS18295 at 78.986 kb on + strand, within ABZR86_RS18295 at 78.987 kb on - strand, within ABZR86_RS18295 at 79.277 kb on + strand at 79.277 kb on + strand at 79.277 kb on + strand at 79.278 kb on - strand at 79.363 kb on - strand at 79.484 kb on + strand at 79.485 kb on - strand at 79.485 kb on - strand at 79.529 kb on - strand, within ABZR86_RS18300
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.04 mg/ml remove 76,189 + ABZR86_RS18285 0.72 +1.0 76,190 - ABZR86_RS18285 0.72 -0.9 76,190 - ABZR86_RS18285 0.72 -0.2 76,190 - ABZR86_RS18285 0.72 -0.0 76,285 + ABZR86_RS18285 0.75 -0.1 76,286 - ABZR86_RS18285 0.75 +0.4 76,549 + ABZR86_RS18285 0.83 +0.2 76,549 + ABZR86_RS18285 0.83 -0.1 76,549 + ABZR86_RS18285 0.83 -0.3 76,550 - ABZR86_RS18285 0.84 +0.9 76,551 + ABZR86_RS18285 0.84 +0.5 76,551 + ABZR86_RS18285 0.84 +0.0 76,551 + ABZR86_RS18285 0.84 +0.5 76,552 - ABZR86_RS18285 0.84 +0.2 76,552 - ABZR86_RS18285 0.84 -0.3 76,552 - ABZR86_RS18285 0.84 +1.0 76,552 - ABZR86_RS18285 0.84 +1.3 76,697 - ABZR86_RS18285 0.88 -1.3 77,069 - +0.0 77,069 - +0.1 77,069 - -0.8 77,069 - -0.4 77,069 - +0.1 77,145 - -1.3 77,465 + ABZR86_RS18290 0.27 -0.3 77,584 + ABZR86_RS18290 0.34 +0.1 77,615 + ABZR86_RS18290 0.37 -0.1 77,616 - ABZR86_RS18290 0.37 -0.5 77,682 - ABZR86_RS18290 0.41 -0.5 77,688 - ABZR86_RS18290 0.41 +0.2 77,790 - ABZR86_RS18290 0.48 +0.5 77,791 + ABZR86_RS18290 0.48 -1.0 77,792 - ABZR86_RS18290 0.48 +0.3 78,322 + ABZR86_RS18290 0.84 -0.7 78,323 - ABZR86_RS18290 0.84 -0.9 78,327 - ABZR86_RS18290 0.84 +0.1 78,368 + ABZR86_RS18290 0.87 +0.2 78,369 - ABZR86_RS18290 0.87 -0.2 78,402 - ABZR86_RS18290 0.89 -0.5 78,464 + -0.0 78,465 - -2.1 78,553 - -0.1 78,679 + -0.5 78,679 + -1.6 78,679 + +0.3 78,680 - -0.1 78,758 + ABZR86_RS18295 0.28 +0.2 78,759 - ABZR86_RS18295 0.28 +0.8 78,986 + ABZR86_RS18295 0.80 +0.1 78,987 - ABZR86_RS18295 0.81 +0.1 79,277 + -0.3 79,277 + -0.3 79,277 + +0.5 79,278 - +0.8 79,363 - -1.3 79,484 + +0.1 79,485 - +1.2 79,485 - -0.3 79,529 - ABZR86_RS18300 0.11 -0.2
Or see this region's nucleotide sequence